Orthogroup:group_316


Homologs in group_316

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8 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_09310 FBDBKF_09310 Morganella morganii S1 escR EscR/YscR/HrcR family type III secretion system export apparatus protein
EHELCC_10100 EHELCC_10100 Morganella morganii S2 escR EscR/YscR/HrcR family type III secretion system export apparatus protein
NLDBIP_10445 NLDBIP_10445 Morganella morganii S4 escR EscR/YscR/HrcR family type III secretion system export apparatus protein
LHKJJB_10910 LHKJJB_10910 Morganella morganii S3 escR EscR/YscR/HrcR family type III secretion system export apparatus protein
HKOGLL_13970 HKOGLL_13970 Morganella morganii S5 escR EscR/YscR/HrcR family type III secretion system export apparatus protein
F4V73_RS08335 F4V73_RS08335 Morganella psychrotolerans sctR type III secretion system export apparatus subunit SctR
F4V73_RS10655 F4V73_RS10655 Morganella psychrotolerans - EscR/YscR/HrcR family type III secretion system export apparatus protein
PMI_RS13245 PMI_RS13245 Proteus mirabilis HI4320 - EscR/YscR/HrcR family type III secretion system export apparatus protein

Distribution of group_316 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_316 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_316

Orthogroup content: 8 members

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This page summarizes the annotation of all members of the orthologous group group_316.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 escR 5
2 sctR 1
3 - 2

Product

# Product Occurence
1 EscR/YscR/HrcR family type III secretion system export apparatus protein 7
2 type III secretion system export apparatus subunit SctR 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG4790 8 U Intracellular trafficking, secretion, and vesicular transport (U) Type III secretory pathway, EscR/YscR component

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K22507 7 type III secretion system export apparatus protein - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00813 8 FliP family

Virulence factor Annotation(s)

VF gene ID Occurences Protein VF ID Category
VFG003519 1 EscR/YscR/HrcR family type III secretion system export apparatus protein VF1025 Effector delivery system

Annotations of the 30 SwissProt hits

Annotation Number of occurrences
Flagellar biosynthetic protein FliP 17
Harpin secretion protein HrcR 2
Harpin secretion protein HrpW 1
Hypersensitivity response secretion protein HrcR 1
Pathogenicity-related ORF2 1
Probable translocation protein y4yL 1
Surface presentation of antigens protein SpaP 4
Virulence protein YscR 1
Yop proteins translocation protein R 2

Protein length

Min length 215
Max length 219
Mean length (sd) 218.5 (1.4)
Median length 219.0

Protein length distribution