Homologs in group_3684

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3 homologs were identified in 1 genome with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
F4V73_RS00065 F4V73_RS00065 24.1 Morganella psychrotolerans vgrG type VI secretion system tip protein VgrG
F4V73_RS09330 F4V73_RS09330 23.8 Morganella psychrotolerans tssI type VI secretion system tip protein TssI/VgrG
F4V73_RS16810 F4V73_RS16810 21.5 Morganella psychrotolerans vgrG type VI secretion system Vgr family protein

Distribution of the homologs in the orthogroup group_3684

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3684

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
K7WKL8 1.03e-39 158 27 16 519 1 vgrG1 Type VI secretion system spike protein VgrG1 Aeromonas hydrophila
E0SAL0 1.24e-39 157 25 11 511 3 vgrGA Putative type VI secretion system protein VgrGA Dickeya dadantii (strain 3937)
Q0PZH5 2.68e-39 157 27 15 517 3 vgrG2 Type VI secretion system spike protein VgrG2 Aeromonas hydrophila
E0SIS4 2.04e-38 154 24 11 511 3 vgrGB Putative type VI secretion system protein VgrGB Dickeya dadantii (strain 3937)
Q9I737 9.68e-37 150 24 19 591 3 vgrG1b Type VI secretion system spike protein VgrG1b Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q0PZF7 1.5e-36 149 25 16 535 3 vgrG3 Type VI secretion system spike protein VgrG3 Aeromonas hydrophila
A0KJB0 1.27e-35 146 25 15 529 1 vgrG1 Type VI secretion system spike protein VgrG1 Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / DSM 30187 / BCRC 13018 / CCUG 14551 / JCM 1027 / KCTC 2358 / NCIMB 9240 / NCTC 8049)
Q9KN42 4.03e-35 145 25 23 684 1 vgrG3 Type VI secretion system spike protein VgrG3 Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Q9I741 6.91e-35 144 26 22 609 1 vgrG1a Type VI secretion system spike protein VgrG1a Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
A0A0H3AIG7 9.76e-35 145 26 23 616 1 vgrG1 Actin cross-linking toxin VgrG1 Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)
Q9KS45 1.49e-34 144 25 23 620 1 vgrG1 Actin cross-linking toxin VgrG1 Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Q9I0F3 3.11e-33 139 23 16 592 1 vgrG1c Type VI secretion system spike protein VgrG1c Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9HYC3 1.18e-32 138 30 8 340 3 vgrG4b Type VI secretion system spike protein VgrG4b Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9KNE7 1.6e-32 137 26 22 625 3 vgrG2 Type VI secretion system spike protein VgrG2 Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Q9HU93 3.01e-24 111 26 7 338 3 vgrG5 Type VI secretion system spike protein VgrG5 Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9I3K1 2.94e-15 83 24 17 509 3 vgrG2a Type VI secretion system spike protein VgrG2a Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9I6M7 8.11e-15 82 24 17 509 1 vgrG2b Type VI secretion system spike protein VgrG2b Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS06965
Feature type CDS
Gene tssI
Product type VI secretion system tip protein TssI/VgrG
Location 1442836 - 1444776 (strand: -1)
Length 1941 (nucleotides) / 646 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3684
Orthogroup size 4
N. genomes 1

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Genomic region

Domains

PF04717 Type VI secretion system/phage-baseplate injector OB domain
PF05954 Phage tail baseplate hub (GPD)
PF10106 Uncharacterized protein conserved in bacteria (DUF2345)
PF22178 Bacteriophage T4 gp5 C-terminal trimerisation domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3501 Intracellular trafficking, secretion, and vesicular transport (U)
Mobilome: prophages, transposons (X)
General function prediction only (R)		 UXR Uncharacterized conserved protein VgrG, implicated in type VI secretion and phage assembly

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K11904 type VI secretion system secreted protein VgrG Bacterial secretion system -

Protein Sequence

MSNVMDNYAEQPRPLTVVIDNSTPCVASRLHAHESLADGFRLEVSLLSVTPLTPALLGKLVVVSYRDHDIIRTFAGLAEQLECEGFHPDKQHYFYRITATDPITFLRHGQQRRLFQNQNSKAQITTLLTAHQLSAFVRFALRHEGEATPCMCQMDESDSAMIRRIMAAQGWFCFRNPDNITQWTITDSLQHAALATCGDIPWRVAQTDDGARITQFRACWQATGQHFSAQTYSQEQHHSRTETQLLSVAGTTQQVHYYDTPADSAQIACDAAAVCAHYYEAGSAISSLCAGMRFRFCDHPVDDYNDEYYISEITHTAESSETGGNPLYHNTFRCHQTHTPFRVPLIAKPRNHALQTATVVGPDNSETWYDAQGRVKVRFHWEDNSGDGSLSQAWLPIIAPGAGAGAGVQFLPRVGDAVVIQFLNGDPDKPVVAGALWYRDHPRPFSDAATSGIYSRSTPDSARGAGNQLRFEDKRDEECLALAAQRDLQLTANNDWLTQIKGAIRCETDKSLTVASKENMQYQSEKQWQLNAREGITQQTEKNLKMQADNTLTADAKTITLTAAQTLTLAVGSSKIELSASGIALSAPQITVKGDGKVTLESAVLTMSAQAKAQLTGALVQIDASAMAEVKGGAVVKINGALTTIN

Flanking regions ( +/- flanking 50bp)

AATTGTGCTGCGGTTCCGTGACACACTGACCTCTCTGTCAGGCTGAAATAATGAGTAATGTTATGGACAACTATGCTGAACAGCCCCGTCCGTTGACGGTTGTGATTGATAACAGCACACCCTGTGTGGCGAGCCGCCTGCATGCACATGAATCATTAGCAGACGGTTTCCGGCTGGAGGTCAGCCTGCTGAGCGTGACGCCGCTCACACCCGCATTGTTAGGCAAGCTGGTGGTTGTCAGCTACCGGGATCATGACATCATCCGTACCTTTGCCGGTCTGGCAGAACAACTTGAATGTGAGGGGTTTCACCCGGACAAACAACACTATTTTTACCGTATCACGGCAACAGACCCGATCACATTTCTCCGTCACGGGCAGCAAAGGCGGCTGTTTCAGAATCAGAACAGCAAAGCGCAGATAACCACGTTGCTCACCGCACATCAATTATCTGCATTTGTCCGTTTTGCCTTGCGCCATGAGGGGGAAGCCACGCCCTGTATGTGTCAGATGGATGAAAGTGACAGCGCGATGATCCGCCGGATTATGGCGGCACAAGGCTGGTTTTGCTTTCGCAACCCGGACAATATCACGCAATGGACAATAACCGATTCGCTGCAACATGCAGCATTGGCGACGTGCGGGGATATTCCCTGGCGGGTGGCACAAACAGATGATGGCGCACGAATAACACAATTCCGTGCCTGCTGGCAGGCAACGGGACAACATTTTTCTGCGCAAACTTACTCTCAGGAGCAGCATCACAGCCGCACGGAGACACAATTGCTGTCTGTGGCAGGCACCACACAGCAGGTGCACTATTATGACACTCCTGCGGACAGCGCGCAGATTGCCTGTGATGCGGCGGCGGTTTGTGCGCACTATTATGAAGCGGGATCGGCAATTTCATCACTTTGTGCAGGGATGCGTTTCCGGTTTTGCGATCATCCGGTTGATGATTATAACGACGAGTATTATATCAGCGAGATAACGCACACTGCCGAGAGCAGCGAAACCGGCGGAAATCCGTTGTATCACAACACTTTCCGTTGTCATCAGACACACACACCATTCCGTGTACCGCTGATTGCCAAACCACGCAATCATGCATTACAGACTGCAACCGTGGTCGGGCCGGATAACAGTGAAACCTGGTATGACGCGCAGGGGCGGGTGAAAGTCCGCTTTCACTGGGAAGATAACAGTGGTGACGGCAGTTTATCTCAGGCGTGGTTGCCGATCATTGCCCCGGGTGCCGGAGCCGGTGCGGGCGTTCAGTTTTTACCCCGGGTCGGGGACGCGGTGGTTATCCAGTTTCTTAATGGTGACCCGGACAAACCGGTGGTGGCGGGTGCGCTCTGGTATCGTGACCATCCGCGCCCTTTCAGTGACGCTGCCACCAGCGGGATCTACAGCCGATCTACGCCGGATAGTGCGCGCGGTGCCGGGAACCAGCTGCGCTTTGAAGATAAACGGGATGAAGAGTGTCTTGCACTGGCAGCGCAGCGTGATTTACAGCTGACGGCAAATAATGACTGGCTGACGCAGATAAAAGGGGCTATCCGCTGTGAAACAGATAAAAGCCTGACTGTCGCCAGCAAAGAAAATATGCAGTATCAGAGTGAAAAACAGTGGCAGTTGAATGCGCGGGAAGGGATCACCCAACAGACAGAAAAAAACCTGAAAATGCAGGCGGATAACACACTGACCGCTGATGCAAAAACCATCACTTTAACCGCCGCACAAACGCTTACCCTTGCCGTCGGCAGCAGCAAAATTGAACTTTCCGCAAGCGGGATAGCACTCAGTGCGCCGCAGATTACTGTAAAAGGTGACGGGAAAGTGACACTGGAAAGTGCCGTTCTGACCATGAGTGCACAGGCAAAAGCACAACTGACCGGCGCGCTGGTGCAGATAGACGCCTCGGCGATGGCAGAAGTGAAGGGCGGCGCGGTTGTTAAAATTAACGGCGCACTGACAACGATTAATTAAGGGGCGGCAATGCTGAGCAAAATACCCTACAGCAGTGTGATGCAGGTGAT