Homologs in group_940

Help

6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_05115 FBDBKF_05115 92.9 Morganella morganii S1 topA type I DNA topoisomerase
EHELCC_12475 EHELCC_12475 92.9 Morganella morganii S2 topA type I DNA topoisomerase
NLDBIP_12815 NLDBIP_12815 92.9 Morganella morganii S4 topA type I DNA topoisomerase
LHKJJB_12675 LHKJJB_12675 92.9 Morganella morganii S3 topA type I DNA topoisomerase
HKOGLL_11290 HKOGLL_11290 92.9 Morganella morganii S5 topA type I DNA topoisomerase
PMI_RS06435 PMI_RS06435 82.2 Proteus mirabilis HI4320 topA type I DNA topoisomerase

Distribution of the homologs in the orthogroup group_940

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_940

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P06612 0.0 1473 80 3 868 1 topA DNA topoisomerase 1 Escherichia coli (strain K12)
P0A2I1 0.0 1462 79 3 868 3 topA DNA topoisomerase 1 Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A2I2 0.0 1462 79 3 868 3 topA DNA topoisomerase 1 Salmonella typhi
Q9KRB2 0.0 1286 69 5 870 3 topA DNA topoisomerase 1 Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
P43012 0.0 1282 69 4 871 3 topA DNA topoisomerase 1 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q9CN30 0.0 1271 69 4 871 3 topA DNA topoisomerase 1 Pasteurella multocida (strain Pm70)
Q9HZJ5 0.0 1213 67 5 865 3 topA DNA topoisomerase 1 Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P57371 0.0 999 54 6 863 3 topA DNA topoisomerase 1 Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
Q8K9P7 0.0 944 51 8 865 3 topA DNA topoisomerase 1 Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
Q5HGI2 2.64e-169 510 40 11 709 3 topA DNA topoisomerase 1 Staphylococcus aureus (strain COL)
Q5HGI2 9.62e-06 53 38 1 62 3 topA DNA topoisomerase 1 Staphylococcus aureus (strain COL)
Q2FZ32 2.64e-169 510 40 11 709 3 topA DNA topoisomerase 1 Staphylococcus aureus (strain NCTC 8325 / PS 47)
Q2FZ32 9.62e-06 53 38 1 62 3 topA DNA topoisomerase 1 Staphylococcus aureus (strain NCTC 8325 / PS 47)
Q2FHI8 2.64e-169 510 40 11 709 3 topA DNA topoisomerase 1 Staphylococcus aureus (strain USA300)
Q2FHI8 9.62e-06 53 38 1 62 3 topA DNA topoisomerase 1 Staphylococcus aureus (strain USA300)
Q06AK7 2.94e-169 510 40 11 709 3 topA DNA topoisomerase 1 Staphylococcus aureus
Q06AK7 8.69e-06 53 38 1 62 3 topA DNA topoisomerase 1 Staphylococcus aureus
Q8NWZ9 8.15e-169 509 39 11 709 3 topA DNA topoisomerase 1 Staphylococcus aureus (strain MW2)
Q8NWZ9 8.69e-06 53 38 1 62 3 topA DNA topoisomerase 1 Staphylococcus aureus (strain MW2)
Q6G9W3 8.15e-169 509 39 11 709 3 topA DNA topoisomerase 1 Staphylococcus aureus (strain MSSA476)
Q6G9W3 8.69e-06 53 38 1 62 3 topA DNA topoisomerase 1 Staphylococcus aureus (strain MSSA476)
Q6GHI5 8.15e-169 509 39 11 709 3 topA DNA topoisomerase 1 Staphylococcus aureus (strain MRSA252)
Q6GHI5 8.69e-06 53 38 1 62 3 topA DNA topoisomerase 1 Staphylococcus aureus (strain MRSA252)
Q7A5Y5 8.15e-169 509 39 11 709 1 topA DNA topoisomerase 1 Staphylococcus aureus (strain N315)
Q7A5Y5 8.69e-06 53 38 1 62 1 topA DNA topoisomerase 1 Staphylococcus aureus (strain N315)
Q99UM1 8.15e-169 509 39 11 709 3 topA DNA topoisomerase 1 Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q99UM1 8.69e-06 53 38 1 62 3 topA DNA topoisomerase 1 Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q2YXL8 3.26e-168 507 39 10 708 3 topA DNA topoisomerase 1 Staphylococcus aureus (strain bovine RF122 / ET3-1)
Q2YXL8 8.69e-06 53 38 1 62 3 topA DNA topoisomerase 1 Staphylococcus aureus (strain bovine RF122 / ET3-1)
Q4L5V2 1.84e-167 505 38 14 753 3 topA DNA topoisomerase 1 Staphylococcus haemolyticus (strain JCSC1435)
Q9KA23 4.23e-165 499 38 10 732 3 topA DNA topoisomerase 1 Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
Q9KA23 5.57e-06 53 53 1 43 3 topA DNA topoisomerase 1 Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
Q8CSU3 2.55e-164 497 39 9 705 3 topA DNA topoisomerase 1 Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200)
Q8CSU3 1.3e-05 52 38 1 62 3 topA DNA topoisomerase 1 Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200)
Q5HPU2 2.55e-164 497 39 9 705 3 topA DNA topoisomerase 1 Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)
Q5HPU2 1.3e-05 52 38 1 62 3 topA DNA topoisomerase 1 Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)
Q9PLZ2 5.27e-164 497 38 15 756 3 topA DNA topoisomerase 1 Campylobacter jejuni subsp. jejuni serotype O:2 (strain ATCC 700819 / NCTC 11168)
P39814 8.24e-163 493 38 12 759 1 topA DNA topoisomerase 1 Bacillus subtilis (strain 168)
Q49X35 6.85e-162 491 38 12 735 3 topA DNA topoisomerase 1 Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 7292 / S-41)
Q49X35 1.41e-05 52 50 1 44 3 topA DNA topoisomerase 1 Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 7292 / S-41)
Q4UM42 1.18e-155 478 38 16 799 3 topA DNA topoisomerase 1 Rickettsia felis (strain ATCC VR-1525 / URRWXCal2)
Q92IH1 1.49e-155 478 38 17 800 3 topA DNA topoisomerase 1 Rickettsia conorii (strain ATCC VR-613 / Malish 7)
Q9CG80 1.32e-154 473 37 15 752 3 topA DNA topoisomerase 1 Lactococcus lactis subsp. lactis (strain IL1403)
Q1RIM1 1.62e-152 470 41 13 664 3 topA DNA topoisomerase 1 Rickettsia bellii (strain RML369-C)
Q68X45 6e-152 468 37 19 800 3 topA DNA topoisomerase 1 Rickettsia typhi (strain ATCC VR-144 / Wilmington)
P55991 9.82e-149 458 38 18 747 1 topA DNA topoisomerase 1 Helicobacter pylori (strain ATCC 700392 / 26695)
P55991 8.85e-06 53 31 6 132 1 topA DNA topoisomerase 1 Helicobacter pylori (strain ATCC 700392 / 26695)
Q9ZDK2 1.01e-146 454 41 12 664 3 topA DNA topoisomerase 1 Rickettsia prowazekii (strain Madrid E)
Q9ZMV7 2.67e-145 449 37 19 752 3 topA DNA topoisomerase 1 Helicobacter pylori (strain J99 / ATCC 700824)
Q9ZMV7 1.07e-05 53 31 6 132 3 topA DNA topoisomerase 1 Helicobacter pylori (strain J99 / ATCC 700824)
Q87AQ6 3.73e-144 449 37 20 781 3 topA DNA topoisomerase 1 Xylella fastidiosa (strain Temecula1 / ATCC 700964)
Q9PEV8 7.4e-143 446 36 19 781 3 topA DNA topoisomerase 1 Xylella fastidiosa (strain 9a5c)
O83409 1.05e-138 432 35 13 765 3 topA DNA topoisomerase 1 Treponema pallidum (strain Nichols)
Q9X909 9.76e-135 428 43 12 606 3 topA DNA topoisomerase 1 Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
O69548 2.88e-133 424 39 16 702 3 topA DNA topoisomerase 1 Mycobacterium leprae (strain TN)
Q9X3X7 7.91e-131 424 38 14 657 3 topA DNA topoisomerase 1 Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4)
P73810 2.17e-130 416 40 7 591 3 topA DNA topoisomerase 1 Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
A0R5D9 2.34e-129 414 42 12 607 1 topA DNA topoisomerase 1 Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)
O34204 9.97e-129 405 38 16 639 3 topA DNA topoisomerase 1 Fervidobacterium islandicum
P9WG49 2.44e-128 411 38 15 704 1 topA DNA topoisomerase 1 Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WG48 2.44e-128 411 38 15 704 3 topA DNA topoisomerase 1 Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
A5U8X0 2.44e-128 411 38 15 704 1 topA DNA topoisomerase 1 Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra)
P0A621 2.44e-128 411 38 15 704 3 topA DNA topoisomerase 1 Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
P34185 1.72e-125 402 40 7 593 3 topA DNA topoisomerase 1 Synechococcus elongatus (strain ATCC 33912 / PCC 7942 / FACHB-805)
P46799 4.75e-120 380 37 15 637 1 topA DNA topoisomerase 1 Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)
O66893 1.9e-108 347 36 9 571 3 topA DNA topoisomerase 1 Aquifex aeolicus (strain VF5)
O51768 1.53e-102 340 35 8 594 3 topA DNA topoisomerase 1 Borreliella burgdorferi (strain ATCC 35210 / DSM 4680 / CIP 102532 / B31)
Q9PHK2 6.13e-99 325 33 15 651 3 XF_a0003 DNA topoisomerase I, plasmid Xylella fastidiosa (strain 9a5c)
P47368 3.14e-98 325 30 20 737 3 topA DNA topoisomerase 1 Mycoplasma genitalium (strain ATCC 33530 / DSM 19775 / NCTC 10195 / G37)
P78032 1.5e-97 323 31 17 739 3 topA DNA topoisomerase 1 Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1)
Q9JN65 3.22e-96 320 32 20 727 3 topA DNA topoisomerase 1 Mycoplasmoides gallisepticum (strain R(low / passage 15 / clone 2))
Q5UQB5 3.62e-95 320 32 15 650 1 TOP1P DNA topoisomerase 1 type prokaryotic Acanthamoeba polyphaga mimivirus
Q59046 3.22e-67 242 28 24 788 3 topA DNA topoisomerase 1 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
O27661 7.33e-60 220 27 17 662 3 topA DNA topoisomerase 1 Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
Q9UZ86 1.79e-57 218 30 17 610 3 rgy Reverse gyrase Pyrococcus abyssi (strain GE5 / Orsay)
P95479 5.44e-55 210 29 19 615 1 rgy Reverse gyrase Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
Q9UYS8 9.21e-54 202 29 16 585 3 topA DNA topoisomerase 1 Pyrococcus abyssi (strain GE5 / Orsay)
O67037 5.99e-53 204 30 18 603 3 rgy1 Reverse gyrase 1 Aquifex aeolicus (strain VF5)
O67226 2.62e-50 196 27 17 615 3 rgy2 Reverse gyrase 2 Aquifex aeolicus (strain VF5)
Q74MA4 3.37e-50 192 28 18 600 1 rgyA Reverse gyrase subunit A Nanoarchaeum equitans (strain Kin4-M)
Q971T7 1.11e-49 194 28 18 614 1 rgy1 Reverse gyrase 1 Sulfurisphaera tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)
O58356 3.67e-49 189 28 20 601 3 topA DNA topoisomerase 1 Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
O51934 8.14e-48 188 28 20 618 1 rgy Reverse gyrase Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)
Q97ZF5 5.27e-46 182 28 18 622 1 rgy2 Reverse gyrase 2 Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
O28469 2.07e-45 177 28 18 592 3 topA DNA topoisomerase 1 Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)
Q8ZXT5 2.25e-45 181 28 22 627 3 rgy Reverse gyrase Pyrobaculum aerophilum (strain ATCC 51768 / DSM 7523 / JCM 9630 / CIP 104966 / NBRC 100827 / IM2)
Q8R979 1.85e-44 177 27 20 617 1 rgy Reverse gyrase Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4)
Q08582 3.6e-44 177 25 18 655 1 rgy1 Reverse gyrase 1 Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770)
Q975P6 3.85e-43 173 26 21 649 3 rgy2 Reverse gyrase 2 Sulfurisphaera tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)
O29238 5.77e-43 172 27 20 621 1 rgy Reverse gyrase Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)
P0DW67 6.55e-41 166 25 17 614 2 rgy2 Reverse gyrase 2 Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770)
P74759 1.43e-40 165 27 19 623 1 rgy Reverse gyrase Saccharolobus shibatae (strain ATCC 51178 / DSM 5389 / JCM 8931 / NBRC 15437 / B12)
Q81IH1 1.79e-39 160 25 21 687 3 topB DNA topoisomerase 3 Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711)
Q97ZZ8 4.21e-38 157 26 18 650 1 rgy1 Reverse gyrase 1 Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
Q6HP19 7.81e-38 155 24 19 686 3 topB DNA topoisomerase 3 Bacillus thuringiensis subsp. konkukian (strain 97-27)
Q81Z97 7.81e-38 155 24 19 686 3 topB DNA topoisomerase 3 Bacillus anthracis
A0R979 7.81e-38 155 24 19 686 3 topB DNA topoisomerase 3 Bacillus thuringiensis (strain Al Hakam)
Q9YC75 9.28e-38 156 28 19 610 3 rgy2 Reverse gyrase 2 Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
Q63GK5 9.6e-38 155 24 19 686 3 topB DNA topoisomerase 3 Bacillus cereus (strain ZK / E33L)
Q73E74 1.3e-37 154 25 22 688 3 topB DNA topoisomerase 3 Bacillus cereus (strain ATCC 10987 / NRS 248)
Q9HM08 1.14e-36 152 24 25 734 3 topA DNA topoisomerase 1 Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)
P96583 2.5e-36 150 27 16 568 3 topB DNA topoisomerase 3 Bacillus subtilis (strain 168)
Q65N90 9.04e-36 149 26 15 569 3 topB DNA topoisomerase 3 Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / CCUG 7422 / NBRC 12200 / NCIMB 9375 / NCTC 10341 / NRRL NRS-1264 / Gibson 46)
O70157 7.95e-35 147 26 14 556 2 Top3a DNA topoisomerase 3-alpha Mus musculus
Q9YCB6 4.43e-34 145 26 26 701 3 rgy1 Reverse gyrase 1 Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
O95985 7.4e-34 143 25 20 657 1 TOP3B DNA topoisomerase 3-beta-1 Homo sapiens
Q9Z321 1.96e-33 142 25 18 599 1 Top3b DNA topoisomerase 3-beta-1 Mus musculus
Q13472 3.3e-33 142 25 14 556 1 TOP3A DNA topoisomerase 3-alpha Homo sapiens
Q6GEH9 7.79e-33 139 25 15 568 3 topB DNA topoisomerase 3 Staphylococcus aureus (strain MRSA252)
Q2FW03 1.73e-32 138 25 15 568 3 topB DNA topoisomerase 3 Staphylococcus aureus (strain NCTC 8325 / PS 47)
Q7A075 1.89e-32 138 25 15 568 3 topB DNA topoisomerase 3 Staphylococcus aureus (strain MW2)
Q6G767 1.89e-32 138 25 15 568 3 topB DNA topoisomerase 3 Staphylococcus aureus (strain MSSA476)
Q7A455 1.89e-32 138 25 15 568 3 topB DNA topoisomerase 3 Staphylococcus aureus (strain N315)
Q99S17 1.89e-32 138 25 15 568 3 topB DNA topoisomerase 3 Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q5HDV4 1.89e-32 138 25 15 568 3 topB DNA topoisomerase 3 Staphylococcus aureus (strain COL)
Q2FEN5 1.89e-32 138 25 15 568 3 topB DNA topoisomerase 3 Staphylococcus aureus (strain USA300)
Q8CRF7 2.51e-32 138 24 27 718 3 topB DNA topoisomerase 3 Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200)
P0C2W6 5.88e-32 137 25 15 571 5 topB Putative DNA topoisomerase 3 Staphylococcus aureus (strain bovine RF122 / ET3-1)
Q8TYK7 1.08e-31 130 31 14 337 1 rgyA Reverse gyrase subunit A Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938)
Q5WAX6 1.1e-31 136 26 16 586 3 topB DNA topoisomerase 3 Shouchella clausii (strain KSM-K16)
Q5HLZ4 1.38e-31 135 24 27 718 3 topB DNA topoisomerase 3 Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)
P13099 2.17e-30 131 25 10 475 1 TOP3 DNA topoisomerase 3 Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
F4ISQ7 2.99e-30 132 26 12 500 2 At2g32000 DNA topoisomerase 3-beta Arabidopsis thaliana
C7J0A2 5.73e-30 131 24 17 586 3 TOP3A DNA topoisomerase 3-alpha Oryza sativa subsp. japonica
Q0J0S6 7.21e-30 130 24 9 495 2 TOP3B DNA topoisomerase 3-beta Oryza sativa subsp. japonica
Q9NG98 1.07e-29 130 24 23 615 2 Top3alpha DNA topoisomerase 3-alpha Drosophila melanogaster
O96651 2.9e-29 129 25 12 491 2 Top3beta DNA topoisomerase 3-beta Drosophila melanogaster
O61660 1.12e-26 120 24 9 503 1 top-3 DNA topoisomerase 3 Caenorhabditis elegans
Q9LVP1 1.8e-26 120 25 14 500 1 TOP3A DNA topoisomerase 3-alpha Arabidopsis thaliana
P34184 3.02e-26 119 22 19 588 3 topA DNA topoisomerase 1 Alkalihalophilus pseudofirmus (strain ATCC BAA-2126 / JCM 17055 / OF4)
Q9KQF5 5.17e-26 117 24 18 564 3 topB DNA topoisomerase 3 Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Q4L8B8 1.28e-25 117 24 18 602 3 topB DNA topoisomerase 3 Staphylococcus haemolyticus (strain JCSC1435)
O60126 5.79e-25 114 23 12 509 1 top3 DNA topoisomerase 3 Schizosaccharomyces pombe (strain 972 / ATCC 24843)
O58530 8.7e-25 115 29 11 367 3 rgy Reverse gyrase Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
O58530 2.93e-23 110 29 9 274 3 rgy Reverse gyrase Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
Q49ZH2 3.77e-24 112 23 24 655 3 topB DNA topoisomerase 3 Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 7292 / S-41)
Q9CP53 2.36e-23 109 25 24 567 3 topB DNA topoisomerase 3 Pasteurella multocida (strain Pm70)
Q6F598 3.51e-23 110 31 13 340 3 rgy Reverse gyrase Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
Q6F598 2.36e-22 107 30 9 271 3 rgy Reverse gyrase Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
Q58907 4.55e-23 109 32 10 259 3 rgy Reverse gyrase Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q58907 2.5e-18 94 26 10 357 3 rgy Reverse gyrase Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
A0A0L0P6P7 9.74e-23 107 23 12 498 3 TOP3 DNA topoisomerase 3 Candida auris
P43704 1.27e-22 107 24 20 560 3 topB DNA topoisomerase 3 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q9YB01 1.09e-21 104 25 15 516 3 topA DNA topoisomerase 1 Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
Q8T2T7 1.7e-21 104 23 13 524 3 top3 DNA topoisomerase 3 Dictyostelium discoideum
P40687 2.07e-21 103 22 20 555 3 topB DNA topoisomerase 3 Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P14294 2.72e-21 103 22 20 555 1 topB DNA topoisomerase 3 Escherichia coli (strain K12)
Q8Z6F5 2.96e-21 102 22 21 556 3 topB DNA topoisomerase 3 Salmonella typhi
O73954 1.56e-20 101 27 11 306 3 topA DNA topoisomerase 1 Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
O73954 3.91e-19 96 28 7 276 3 topA DNA topoisomerase 1 Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
P40114 1.62e-16 88 22 18 568 3 topX DNA topoisomerase 1 Bacillus anthracis
F1SVH1 9.87e-10 66 27 7 228 1 rgyB Reverse gyrase subunit B Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938)
P46494 3.65e-06 51 28 12 195 4 HI_0656.1 Uncharacterized protein HI_0656.1 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P45771 0.000848 44 31 6 101 4 yrdD Uncharacterized protein YrdD Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS05570
Feature type CDS
Gene topA
Product type I DNA topoisomerase
Location 1184169 - 1186769 (strand: -1)
Length 2601 (nucleotides) / 866 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_940
Orthogroup size 7
N. genomes 7

Actions

Genomic region

Domains

PF01131 DNA topoisomerase
PF01396 Topoisomerase DNA binding C4 zinc finger
PF01751 Toprim domain
PF08272 Topoisomerase I zinc-ribbon-like
PF21372 Topoisomerase I, zinc finger

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0550 Replication, recombination and repair (L) L DNA topoisomerase IA

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03168 DNA topoisomerase I [EC:5.6.2.1] - -

Protein Sequence

MGKALVIVESPAKAKTINKYLGKDYVVKSSVGHIRDLPTSGSASRKPAVAGDKVKDKVKKVKKDERTALVSRMGVDPFNGWEANYQILPGKEKVVSELQHLASDASHIYLATDLDREGEAIAWHLREVIGGDDSRFSRVVFNEITKNAITQAFEQPGELNIDRVNAQQARRFMDRVVGYMVSPLLWKKIARGLSAGRVQSVAVRLIVEREREIKAFVPEEYWQIHALLSDKTEQLRMEVAQENGKAFKPVNEKQTQAAVTKLQSAAYKVVDREDRPTSSKPGAPFITSTLQQAASTRLSYGVKKTMMMAQRLYEAGHITYMRTDSTNLSQDAIVMAREYITESFGDKYLPENPNIYSNKENSQEAHEAIRPSDITITEADLSDMEPDARRLYQLIWRQFVACQMMPAKYDSTTLTVEAGDFSLKAKGRTLRFDGWTKVMPALRKNDEDRTLPPIEVGTVMALDSLEPAQHFTKPPARFSEASLVKELEKRGIGRPSTYASIISTIQDRGYVKVESRRFYAEKMGQIVTDRLEETFAELMNYDFTARMENQLDHIANNEAQWKSVLDEFFADFSTQLDKASLEPEEGGMRTNPMVITSIICPTCERPMGIRTASTGVFLGCSGYALPPKERCKQTINLIPEHEILNILEGDDAETNALRARRRCPKCGTAMDSYLIDTTRKMHVCGNNPECEGYEVEEGEFRIKGYEGPVVECEKCGSEMHLKMGRFGKYMGCTNDECKNTRKILRNGEVAPPKEDPVPLPEMPCEKSDAYFVLRDGAAGIFLAAHNFPKSRETRAPQVAELVRFKDRLSEKMRYLADAPVADPEGNPTTVRWSRKTKQQYVASDKDGKATGWSAFYIDGKWVEKTK

Flanking regions ( +/- flanking 50bp)

CAAAAATTGGCGTTTTTATAACCGCCCCGAAAATTTAGGTAATGATAATTATGGGTAAAGCTCTGGTCATCGTGGAGTCCCCGGCAAAAGCCAAAACGATTAACAAGTATCTCGGCAAAGACTACGTGGTGAAATCCAGCGTCGGTCATATCCGGGATCTGCCGACAAGTGGTTCAGCGAGCCGTAAACCCGCTGTAGCAGGCGACAAAGTAAAAGACAAAGTCAAAAAAGTTAAAAAAGACGAACGCACTGCGCTGGTCAGCCGTATGGGTGTTGACCCGTTTAACGGCTGGGAAGCAAATTATCAGATCCTGCCGGGAAAAGAGAAGGTAGTATCAGAATTACAGCACCTTGCCAGTGACGCGTCTCACATCTATCTCGCGACGGACCTTGACCGCGAAGGGGAAGCCATTGCGTGGCACCTGCGGGAAGTGATCGGTGGTGATGACAGTCGTTTCAGTCGTGTTGTCTTTAATGAGATAACAAAAAATGCCATTACCCAGGCGTTTGAACAGCCCGGTGAACTGAATATTGACCGGGTGAATGCCCAGCAGGCGCGTCGTTTTATGGATCGCGTGGTCGGCTATATGGTGTCCCCGTTGCTGTGGAAAAAAATTGCCCGCGGTTTATCTGCCGGTCGTGTACAGTCGGTGGCCGTACGCCTGATTGTTGAGCGCGAGCGCGAAATTAAAGCCTTTGTGCCTGAAGAGTACTGGCAGATCCACGCCTTACTGTCTGATAAAACAGAACAGTTACGCATGGAAGTTGCACAGGAAAACGGCAAAGCCTTTAAACCGGTCAATGAGAAACAAACGCAAGCTGCGGTGACAAAACTGCAATCTGCGGCATACAAGGTTGTTGACCGGGAAGATCGCCCGACATCCAGCAAGCCCGGCGCACCTTTTATTACCTCCACGTTGCAGCAGGCTGCCAGTACCCGCCTGAGCTACGGCGTGAAAAAAACCATGATGATGGCTCAGCGTCTGTATGAAGCCGGACACATTACCTATATGCGTACCGACTCAACAAATCTGAGTCAGGATGCGATTGTGATGGCGCGGGAATATATCACTGAGAGTTTCGGTGATAAGTATCTCCCTGAAAATCCGAACATTTACAGTAATAAAGAAAATTCTCAGGAAGCGCACGAAGCTATCCGTCCGTCGGATATTACTATCACGGAAGCGGATTTGTCGGATATGGAGCCGGATGCCCGCCGTCTGTATCAGTTAATCTGGCGTCAGTTCGTGGCGTGTCAGATGATGCCGGCAAAATACGACTCCACCACACTGACAGTGGAAGCCGGTGATTTTAGTCTGAAAGCCAAAGGGCGCACATTGCGTTTCGACGGCTGGACCAAAGTCATGCCTGCGCTGCGCAAGAATGATGAAGACAGAACGCTGCCGCCGATTGAGGTGGGAACGGTCATGGCGCTGGACTCTCTGGAGCCTGCGCAGCACTTTACCAAGCCGCCTGCACGTTTCAGTGAAGCATCGCTGGTGAAAGAGCTGGAGAAACGTGGCATCGGGCGTCCGTCCACGTATGCCTCGATTATCTCTACTATCCAGGATCGCGGTTATGTCAAAGTGGAAAGCCGTCGTTTCTATGCAGAAAAAATGGGACAAATCGTCACGGACCGTCTGGAAGAGACGTTCGCTGAGCTGATGAACTACGATTTCACCGCGCGGATGGAAAACCAGCTTGACCACATTGCCAATAATGAGGCGCAATGGAAGTCCGTGCTGGATGAGTTTTTTGCCGATTTCAGTACGCAGCTTGATAAAGCGAGTCTGGAGCCGGAAGAAGGCGGTATGCGCACGAATCCGATGGTGATCACCTCGATTATCTGCCCGACCTGTGAACGTCCGATGGGGATCCGCACGGCATCGACCGGTGTATTCCTGGGCTGTTCCGGTTATGCGTTGCCGCCGAAAGAGCGCTGCAAACAAACTATCAACCTGATCCCTGAGCATGAAATTCTGAATATCCTCGAAGGGGATGATGCGGAAACAAATGCGCTGCGCGCCCGTCGCCGCTGCCCGAAATGCGGCACAGCGATGGACAGCTATCTTATCGACACCACCCGCAAAATGCATGTGTGCGGTAATAACCCGGAATGTGAAGGTTATGAAGTCGAAGAGGGCGAATTCCGCATTAAAGGGTATGAAGGCCCGGTTGTTGAGTGTGAGAAATGTGGCTCTGAGATGCACCTGAAAATGGGACGTTTCGGTAAATACATGGGTTGTACCAACGACGAATGTAAAAATACCCGCAAAATTTTACGCAACGGCGAAGTGGCACCACCGAAGGAAGATCCGGTGCCGTTACCGGAAATGCCGTGTGAAAAATCAGACGCTTACTTTGTTCTGCGTGATGGCGCAGCCGGTATTTTCCTGGCAGCGCATAACTTCCCGAAATCACGGGAAACCCGCGCACCGCAGGTGGCTGAGTTAGTCCGCTTTAAAGACCGTTTATCTGAAAAAATGCGCTATCTGGCGGATGCACCGGTTGCGGACCCGGAAGGGAACCCGACTACTGTGCGCTGGAGCCGTAAAACCAAGCAGCAGTATGTGGCATCGGATAAAGACGGAAAAGCGACTGGCTGGTCTGCATTTTATATCGACGGCAAATGGGTTGAAAAAACTAAATAAATTCGAACCTGTAGTTTGAATGAATAAAAATAAAAAACCAGTCAGATTAT