COG0550


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0550, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 21 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description DNA topoisomerase IA
Function(s) descr. Replication, recombination and repair (L)

Occurence in the database

COG0550 is associated with 21 different proteins (see tab "Protein list" and "Profile")
The 21 proteins are classified into 3 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_940 FBDBKF_05115 29121 31709 -1 topA type I DNA topoisomerase Morganella morganii S1
1 group_976 FBDBKF_05395 87191 89155 -1 topB DNA topoisomerase IA Morganella morganii S1
2 group_2434 FBDBKF_19750 13364 15418 1 topB DNA topoisomerase I, ssDNA-binding Zn-finger and Zn-ribbon domains Morganella morganii S1
3 group_2434 EHELCC_10845 207133 209187 1 topB DNA topoisomerase I, ssDNA-binding Zn-finger and Zn-ribbon domains Morganella morganii S2
4 group_976 EHELCC_12195 92339 94303 1 topB DNA topoisomerase IA Morganella morganii S2
5 group_940 EHELCC_12475 149785 152373 1 topA type I DNA topoisomerase Morganella morganii S2
6 group_2434 NLDBIP_11190 185404 187458 1 topB DNA topoisomerase I, ssDNA-binding Zn-finger and Zn-ribbon domains Morganella morganii S4
7 group_976 NLDBIP_12535 92294 94258 1 topB DNA topoisomerase IA Morganella morganii S4
8 group_940 NLDBIP_12815 149740 152328 1 topA type I DNA topoisomerase Morganella morganii S4
9 group_2434 LHKJJB_10165 4070 6124 -1 topB DNA topoisomerase I, ssDNA-binding Zn-finger and Zn-ribbon domains Morganella morganii S3
10 group_976 LHKJJB_12395 92339 94303 1 topB DNA topoisomerase IA Morganella morganii S3
11 group_940 LHKJJB_12675 149785 152373 1 topA type I DNA topoisomerase Morganella morganii S3
12 group_976 HKOGLL_11010 92339 94303 1 topB DNA topoisomerase IA Morganella morganii S5
13 group_940 HKOGLL_11290 149785 152373 1 topA type I DNA topoisomerase Morganella morganii S5
14 group_2434 HKOGLL_16330 4079 6133 -1 topB DNA topoisomerase I, ssDNA-binding Zn-finger and Zn-ribbon domains Morganella morganii S5
15 group_976 F4V73_RS03900 825693 827609 1 DNA topoisomerase III Morganella psychrotolerans
16 group_940 F4V73_RS05570 1184169 1186769 -1 topA type I DNA topoisomerase Morganella psychrotolerans
17 group_940 PMI_RS06435 1411151 1413748 -1 topA type I DNA topoisomerase Proteus mirabilis HI4320
18 group_976 PMI_RS07250 1586782 1588749 -1 DNA topoisomerase III Proteus mirabilis HI4320
19 group_2434 PMI_RS12960 2874365 2876419 -1 DNA topoisomerase III Proteus mirabilis HI4320
20 group_2434 PMI_RS18625 18144 20462 1 topB type IA DNA topoisomerase Proteus mirabilis HI4320