Homologs in group_149

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9 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_02620 FBDBKF_02620 94.5 Morganella morganii S1 dadA Glycine/D-amino acid oxidase (deaminating)
EHELCC_03090 EHELCC_03090 94.5 Morganella morganii S2 dadA Glycine/D-amino acid oxidase (deaminating)
NLDBIP_00370 NLDBIP_00370 94.5 Morganella morganii S4 dadA Glycine/D-amino acid oxidase (deaminating)
LHKJJB_01665 LHKJJB_01665 94.5 Morganella morganii S3 dadA Glycine/D-amino acid oxidase (deaminating)
HKOGLL_01705 HKOGLL_01705 94.5 Morganella morganii S5 dadA Glycine/D-amino acid oxidase (deaminating)
PMI_RS10590 PMI_RS10590 59.2 Proteus mirabilis HI4320 - FAD-dependent oxidoreductase
PMI_RS13060 PMI_RS13060 27.7 Proteus mirabilis HI4320 - FAD-dependent oxidoreductase
PMI_RS14000 PMI_RS14000 83.5 Proteus mirabilis HI4320 - FAD-dependent oxidoreductase
PMI_RS15210 PMI_RS15210 24.2 Proteus mirabilis HI4320 - TIGR03364 family FAD-dependent oxidoreductase

Distribution of the homologs in the orthogroup group_149

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_149

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q52671 2.58e-13 75 24 19 434 3 soxB Sarcosine oxidase subunit beta Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003)
Q8GAI3 7.7e-13 74 23 5 264 1 abo 4-methylaminobutanoate oxidase (formaldehyde-forming) Paenarthrobacter nicotinovorans
Q9UL12 9.32e-13 74 22 17 448 1 SARDH Sarcosine dehydrogenase, mitochondrial Homo sapiens
Q9AGP3 1.2e-12 73 23 12 415 1 soxB Sarcosine oxidase subunit beta Arthrobacter sp.
Q99LB7 1.42e-12 73 22 15 448 1 Sardh Sarcosine dehydrogenase, mitochondrial Mus musculus
Q88Q83 1.58e-12 72 22 13 416 1 thiO Glycine oxidase Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)
P33642 4.92e-12 70 22 13 411 3 thiO Glycine oxidase Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q64380 5.28e-12 72 21 15 448 1 Sardh Sarcosine dehydrogenase, mitochondrial Rattus norvegicus
P40875 1.22e-11 69 23 12 415 1 soxB Sarcosine oxidase subunit beta Corynebacterium sp. (strain P-1)
Q63342 1.1e-09 64 21 4 263 1 Dmgdh Dimethylglycine dehydrogenase, mitochondrial Rattus norvegicus
P40873 2.61e-09 62 22 8 271 1 soxA Monomeric sarcosine oxidase Arthrobacter sp. (strain TE1826)
Q9UI17 2.73e-09 63 20 7 315 1 DMGDH Dimethylglycine dehydrogenase, mitochondrial Homo sapiens
Q50LF2 2.47e-08 59 23 11 415 1 soxB Sarcosine oxidase subunit beta Corynebacterium sp. (strain U-96)
Q9DBT9 3.54e-08 59 18 10 426 1 Dmgdh Dimethylglycine dehydrogenase, mitochondrial Mus musculus
Q9P0Z9 8.77e-08 57 21 13 425 1 PIPOX Peroxisomal sarcosine oxidase Homo sapiens
P40859 9.09e-08 57 22 7 260 1 soxA Monomeric sarcosine oxidase Bacillus sp. (strain B-0618)
B1JHH1 2.5e-07 56 23 10 265 3 solA N-methyl-L-tryptophan oxidase Yersinia pseudotuberculosis serotype O:3 (strain YPIII)
Q669J9 2.5e-07 56 23 10 265 3 solA N-methyl-L-tryptophan oxidase Yersinia pseudotuberculosis serotype I (strain IP32953)
A4TLT6 2.5e-07 56 23 10 265 3 solA N-methyl-L-tryptophan oxidase Yersinia pestis (strain Pestoides F)
Q1CI06 2.5e-07 56 23 10 265 3 solA N-methyl-L-tryptophan oxidase Yersinia pestis bv. Antiqua (strain Nepal516)
A9R633 2.5e-07 56 23 10 265 3 solA N-methyl-L-tryptophan oxidase Yersinia pestis bv. Antiqua (strain Angola)
P58526 2.5e-07 56 23 10 265 3 solA N-methyl-L-tryptophan oxidase Yersinia pestis
B2K770 2.5e-07 56 23 10 265 3 solA N-methyl-L-tryptophan oxidase Yersinia pseudotuberculosis serotype IB (strain PB1/+)
Q1C6L1 2.5e-07 56 23 10 265 3 solA N-methyl-L-tryptophan oxidase Yersinia pestis bv. Antiqua (strain Antiqua)
A7FH13 2.5e-07 56 23 10 265 3 solA N-methyl-L-tryptophan oxidase Yersinia pseudotuberculosis serotype O:1b (strain IP 31758)
O31616 9.24e-07 54 23 5 212 1 thiO Glycine oxidase Bacillus subtilis (strain 168)
P23342 2.16e-06 53 22 5 222 1 soxA Monomeric sarcosine oxidase Bacillus sp. (strain NS-129)
Q9AGP8 5.73e-06 52 21 14 437 1 dmg Dimethylglycine oxidase Arthrobacter globiformis
Q89T28 5.89e-06 52 25 3 196 3 dadA D-amino acid dehydrogenase Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110)
Q7TSQ8 2.69e-05 50 23 5 221 1 Pdpr Pyruvate dehydrogenase phosphatase regulatory subunit, mitochondrial Mus musculus
C0PBF8 5.2e-05 49 29 2 110 1 DAO D-amino-acid oxidase Zea mays
O46504 5.84e-05 49 24 7 231 1 PDPR Pyruvate dehydrogenase phosphatase regulatory subunit, mitochondrial Bos taurus
Q2IZZ7 6.51e-05 48 26 5 191 3 dadA D-amino acid dehydrogenase Rhodopseudomonas palustris (strain HaA2)
O87388 6.58e-05 48 23 12 434 3 soxB Sarcosine oxidase subunit beta Rhizobium meliloti (strain 1021)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS05080
Feature type CDS
Gene -
Product FAD-binding oxidoreductase
Location 1082251 - 1083675 (strand: -1)
Length 1425 (nucleotides) / 474 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_149
Orthogroup size 10
N. genomes 7

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Genomic region

Domains

PF01266 FAD dependent oxidoreductase

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0665 Amino acid transport and metabolism (E) E Glycine/D-amino acid oxidase (deaminating)

Protein Sequence

MKISRRKLILGVGAAGVLAGGASVLVPMVRRDGKFVETTSRAKAVAGTEGALPKEADTVIIGGGMMGIMTAINLAERGMSVTVLEKGDIAGEQSGRAYSQIISYKTSKEIFPLHHYGKMLWRGMNEKIGADTSYRTQGRVEVPSSADDLEKSQAWVESAKVWASDFDAPLNTRFIKGDELKQRLAGAKTDWPVAGFEEDSGSVDPETGVPVLAEYAKTLGVKIFTHCAVRGIETAGGKVSDVVTEKGAIKTSHVVLTGGIWSRLFMGNLGIDIPTLNVYLSQQRVSGVPGAPRGNVHLPSGIHFREQADGTYAVAPRIFTSSVVKDSFLLGPKFLHLLGGGELPLEFSIGEDLFNSFKMATSWNLDEASPFETYRIATATQNSEHLDAVFARMKAEFPVFEQSKVVERWGAIVAPTFDELPIISEVKEYPGLVINTATVWGMTEGPASGEITADIVTGKKPVIDPAPFSLSRFS

Flanking regions ( +/- flanking 50bp)

TTTATTAGAGAATTACAATATAAATATTAAATAAAATGATGAGGCTTTAGATGAAAATCTCACGCAGAAAGTTAATTTTAGGGGTTGGTGCTGCCGGGGTATTGGCAGGTGGTGCTTCAGTATTAGTTCCGATGGTGCGCCGCGACGGTAAATTTGTGGAAACCACATCCCGTGCAAAAGCGGTTGCCGGTACAGAAGGTGCGTTACCGAAAGAAGCTGATACGGTGATTATCGGCGGCGGCATGATGGGCATAATGACCGCAATTAACCTGGCGGAAAGAGGCATGAGCGTCACCGTCCTGGAAAAAGGGGATATTGCCGGTGAGCAGTCCGGCCGGGCTTACAGCCAGATCATCAGCTACAAAACATCAAAAGAAATTTTCCCGCTGCACCATTACGGCAAAATGCTGTGGCGCGGTATGAATGAAAAAATTGGTGCGGATACCAGCTACCGGACTCAGGGTCGTGTTGAAGTGCCGTCAAGTGCGGACGATCTCGAAAAATCACAGGCGTGGGTTGAATCCGCCAAAGTGTGGGCGTCTGATTTTGATGCGCCGCTCAATACCCGTTTTATTAAGGGTGATGAATTAAAACAACGCCTTGCCGGTGCAAAAACAGACTGGCCAGTTGCCGGGTTTGAAGAAGATTCCGGCAGTGTGGACCCGGAAACAGGTGTGCCGGTTCTGGCAGAATATGCCAAAACGCTGGGTGTCAAAATTTTCACCCATTGTGCGGTTCGCGGCATTGAAACCGCAGGCGGTAAAGTATCTGATGTTGTTACTGAGAAAGGCGCAATCAAAACCTCTCATGTTGTACTGACCGGGGGGATCTGGTCGCGTCTGTTTATGGGCAATCTGGGTATTGATATCCCGACACTGAATGTGTATTTGTCACAGCAAAGGGTTTCCGGCGTACCGGGAGCACCACGCGGCAATGTGCATTTACCGAGCGGTATTCACTTCCGCGAGCAGGCGGATGGTACTTATGCCGTAGCTCCGCGCATTTTCACCAGCTCCGTGGTGAAAGACAGCTTCCTGCTGGGACCTAAATTCCTGCATCTGCTGGGCGGCGGCGAATTGCCGCTGGAGTTCTCCATCGGGGAAGATTTATTTAACTCCTTTAAAATGGCGACATCCTGGAACCTTGATGAAGCATCACCTTTTGAGACTTACCGGATTGCGACAGCCACACAAAACAGCGAACATCTGGATGCGGTATTCGCCCGCATGAAAGCAGAGTTCCCTGTATTTGAACAATCAAAAGTGGTTGAGCGCTGGGGCGCGATTGTTGCACCAACGTTCGACGAACTGCCGATTATTTCTGAAGTGAAAGAGTATCCGGGGCTGGTTATTAATACAGCGACCGTCTGGGGAATGACCGAAGGTCCGGCATCCGGTGAAATTACAGCGGATATTGTTACCGGCAAAAAACCGGTTATTGATCCGGCACCGTTTAGTCTTTCGCGTTTCAGTTAATTAGTTAATTACCTGCAATATTATAAAGAGGCTCAATATGCGTTATAAAA