Homologs in group_2534

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5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_02335 FBDBKF_02335 60.0 Morganella morganii S1 - Type 1 fimbrial protein
EHELCC_02805 EHELCC_02805 60.0 Morganella morganii S2 - Type 1 fimbrial protein
NLDBIP_00655 NLDBIP_00655 60.0 Morganella morganii S4 - Type 1 fimbrial protein
LHKJJB_01380 LHKJJB_01380 60.0 Morganella morganii S3 - Type 1 fimbrial protein
HKOGLL_01420 HKOGLL_01420 60.0 Morganella morganii S5 - Type 1 fimbrial protein

Distribution of the homologs in the orthogroup group_2534

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2534

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q03011 0.000206 41 47 1 42 1 mrpA Major MR/P fimbria protein Proteus mirabilis (strain HI4320)
P0A1T0 0.000591 39 24 3 108 3 ymdA Uncharacterized protein YmdA Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A1T1 0.000591 39 24 3 108 3 ymdA Uncharacterized protein YmdA Salmonella typhi

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS04715
Feature type CDS
Gene -
Product type 1 fimbrial protein
Location 995093 - 995410 (strand: -1)
Length 318 (nucleotides) / 105 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2534
Orthogroup size 6
N. genomes 6

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Genomic region

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3539 Cell motility (N) N Pilin (type 1 fimbrial protein)

Protein Sequence

MSKLTRLVLVAGIALSFVAHSETQGQQGGTISFQGALVESPCSYNISGGNINTECHRSGQTEPYNGKMQAGNNFKGTLLPDHIGETKVMPLPTDPDKYIVTLSYR

Flanking regions ( +/- flanking 50bp)

ACTAAAAAGAGAACCTTCGTTTAGTATCGAATAATAGAGAGTAAAAAAATATGTCTAAGTTAACCCGTTTAGTTTTAGTGGCAGGCATTGCACTGTCTTTTGTTGCACACAGCGAAACACAAGGCCAGCAAGGTGGTACTATATCATTCCAGGGCGCACTGGTTGAATCACCTTGTTCTTATAATATTTCAGGTGGCAATATTAATACCGAGTGTCACCGCTCAGGTCAGACTGAACCCTATAATGGTAAAATGCAGGCAGGAAATAATTTCAAAGGCACGTTACTTCCGGACCACATTGGTGAAACCAAGGTAATGCCACTGCCGACAGATCCTGATAAGTACATCGTCACACTAAGCTATCGTTAATACCGGCAAAGATATACACAACAGCAAATACAATAATAAAATAACAACGT