Homologs in group_2534

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5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_02335 FBDBKF_02335 100.0 Morganella morganii S1 - Type 1 fimbrial protein
EHELCC_02805 EHELCC_02805 100.0 Morganella morganii S2 - Type 1 fimbrial protein
LHKJJB_01380 LHKJJB_01380 100.0 Morganella morganii S3 - Type 1 fimbrial protein
HKOGLL_01420 HKOGLL_01420 100.0 Morganella morganii S5 - Type 1 fimbrial protein
F4V73_RS04715 F4V73_RS04715 60.0 Morganella psychrotolerans - type 1 fimbrial protein

Distribution of the homologs in the orthogroup group_2534

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2534

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0A1T0 0.000156 40 32 2 68 3 ymdA Uncharacterized protein YmdA Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A1T1 0.000156 40 32 2 68 3 ymdA Uncharacterized protein YmdA Salmonella typhi

  • Number of RefSeq hits:

General

Source Morganella morganii S4
Locus tag NLDBIP_00655
Feature type CDS
Gene -
Product Type 1 fimbrial protein
Location 135517 - 135837 (strand: 1)
Length 321 (nucleotides) / 106 (amino acids)

Contig

Accession ZDB_519
Length 680340 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2534
Orthogroup size 6
N. genomes 6

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Genomic region

Protein Sequence

MSMLNRLILVAGIALSFVTHSASLQGQQGGVINFYGSLTEAPCTYQVSGNNVNAECYRSGETAKYNSSVQADNKLNGTLIPDNIGEVNITPVLSDSEKHIVTVSYR

Flanking regions ( +/- flanking 50bp)

ATATTAAAACGGGACACTTTCAGTTAATATCGAATACAGAGAGTAAAAATATGTCTATGTTAAACCGTTTAATTTTAGTTGCAGGTATTGCATTATCTTTTGTTACACACAGCGCATCATTACAGGGTCAGCAAGGCGGCGTCATCAATTTCTACGGGTCACTGACAGAAGCCCCCTGCACCTATCAGGTATCCGGTAATAACGTCAATGCCGAATGTTACCGTTCCGGTGAAACTGCAAAATATAACAGCAGTGTTCAGGCGGATAATAAACTTAACGGCACATTAATACCGGATAATATTGGTGAAGTAAATATCACTCCGGTTTTATCTGATTCAGAAAAACATATTGTCACCGTAAGCTATCGCTGATTCGGCAAAGATATACTACACAGCAAATATAGAAGTCAAATAACGGATTT