Homologs in group_567

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_01480 FBDBKF_01480 92.9 Morganella morganii S1 grcA autonomous glycyl radical cofactor GrcA
EHELCC_00065 EHELCC_00065 92.9 Morganella morganii S2 grcA autonomous glycyl radical cofactor GrcA
NLDBIP_03395 NLDBIP_03395 92.9 Morganella morganii S4 grcA autonomous glycyl radical cofactor GrcA
LHKJJB_04910 LHKJJB_04910 92.9 Morganella morganii S3 grcA autonomous glycyl radical cofactor GrcA
HKOGLL_02135 HKOGLL_02135 92.9 Morganella morganii S5 grcA autonomous glycyl radical cofactor GrcA
PMI_RS09365 PMI_RS09365 77.2 Proteus mirabilis HI4320 grcA autonomous glycyl radical cofactor GrcA

Distribution of the homologs in the orthogroup group_567

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_567

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
A1JKI9 1.88e-72 214 79 0 127 3 grcA Autonomous glycyl radical cofactor Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)
P18953 6.72e-72 213 79 0 127 2 grcA Autonomous glycyl radical cofactor Serratia liquefaciens
A8GI38 1.55e-71 212 79 0 127 3 grcA Autonomous glycyl radical cofactor Serratia proteamaculans (strain 568)
B1JRB2 2.83e-70 209 77 0 127 3 grcA Autonomous glycyl radical cofactor Yersinia pseudotuberculosis serotype O:3 (strain YPIII)
Q667T8 2.83e-70 209 77 0 127 3 grcA Autonomous glycyl radical cofactor Yersinia pseudotuberculosis serotype I (strain IP32953)
A4TKZ1 2.83e-70 209 77 0 127 3 grcA Autonomous glycyl radical cofactor Yersinia pestis (strain Pestoides F)
Q1CKF7 2.83e-70 209 77 0 127 3 grcA Autonomous glycyl radical cofactor Yersinia pestis bv. Antiqua (strain Nepal516)
A9R3Y7 2.83e-70 209 77 0 127 3 grcA Autonomous glycyl radical cofactor Yersinia pestis bv. Antiqua (strain Angola)
Q8ZD84 2.83e-70 209 77 0 127 3 grcA Autonomous glycyl radical cofactor Yersinia pestis
B2KA62 2.83e-70 209 77 0 127 3 grcA Autonomous glycyl radical cofactor Yersinia pseudotuberculosis serotype IB (strain PB1/+)
Q1C569 2.83e-70 209 77 0 127 3 grcA Autonomous glycyl radical cofactor Yersinia pestis bv. Antiqua (strain Antiqua)
A7FFS5 2.83e-70 209 77 0 127 3 grcA Autonomous glycyl radical cofactor Yersinia pseudotuberculosis serotype O:1b (strain IP 31758)
A7MH19 5.07e-70 209 76 0 127 3 grcA Autonomous glycyl radical cofactor Cronobacter sakazakii (strain ATCC BAA-894)
Q83K21 9.47e-70 208 78 0 127 3 grcA Autonomous glycyl radical cofactor Shigella flexneri
Q6D209 1.53e-69 207 74 0 127 3 grcA Autonomous glycyl radical cofactor Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672)
C6DC10 2.8e-69 207 74 0 127 3 grcA Autonomous glycyl radical cofactor Pectobacterium carotovorum subsp. carotovorum (strain PC1)
Q32CU0 4.8e-69 206 77 0 127 3 grcA Autonomous glycyl radical cofactor Shigella dysenteriae serotype 1 (strain Sd197)
B4F057 8.68e-69 205 77 0 127 3 grcA Autonomous glycyl radical cofactor Proteus mirabilis (strain HI4320)
Q3YYT6 1.06e-68 205 77 0 127 3 grcA Autonomous glycyl radical cofactor Shigella sonnei (strain Ss046)
Q31XQ5 1.06e-68 205 77 0 127 3 grcA Autonomous glycyl radical cofactor Shigella boydii serotype 4 (strain Sb227)
B2TYK2 1.06e-68 205 77 0 127 3 grcA Autonomous glycyl radical cofactor Shigella boydii serotype 18 (strain CDC 3083-94 / BS512)
B6I5F4 1.06e-68 205 77 0 127 3 grcA Autonomous glycyl radical cofactor Escherichia coli (strain SE11)
P68066 1.06e-68 205 77 0 127 1 grcA Autonomous glycyl radical cofactor Escherichia coli (strain K12)
B1IVP8 1.06e-68 205 77 0 127 3 grcA Autonomous glycyl radical cofactor Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks)
A8A391 1.06e-68 205 77 0 127 3 grcA Autonomous glycyl radical cofactor Escherichia coli O9:H4 (strain HS)
B1XBQ6 1.06e-68 205 77 0 127 3 grcA Autonomous glycyl radical cofactor Escherichia coli (strain K12 / DH10B)
C4ZYK2 1.06e-68 205 77 0 127 3 grcA Autonomous glycyl radical cofactor Escherichia coli (strain K12 / MC4100 / BW2952)
B7M8J4 1.06e-68 205 77 0 127 3 grcA Autonomous glycyl radical cofactor Escherichia coli O8 (strain IAI1)
B7MYL2 1.06e-68 205 77 0 127 3 grcA Autonomous glycyl radical cofactor Escherichia coli O81 (strain ED1a)
B5Z153 1.06e-68 205 77 0 127 3 grcA Autonomous glycyl radical cofactor Escherichia coli O157:H7 (strain EC4115 / EHEC)
P68067 1.06e-68 205 77 0 127 3 grcA Autonomous glycyl radical cofactor Escherichia coli O157:H7
B7LDH2 1.06e-68 205 77 0 127 3 grcA Autonomous glycyl radical cofactor Escherichia coli (strain 55989 / EAEC)
A7ZQ24 1.06e-68 205 77 0 127 3 grcA Autonomous glycyl radical cofactor Escherichia coli O139:H28 (strain E24377A / ETEC)
A6TCJ1 1.25e-68 205 77 0 127 3 grcA Autonomous glycyl radical cofactor Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
B5XNF9 1.25e-68 205 77 0 127 3 grcA Autonomous glycyl radical cofactor Klebsiella pneumoniae (strain 342)
Q7CQ05 1.83e-68 204 76 0 127 3 grcA Autonomous glycyl radical cofactor Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q8XFE0 1.83e-68 204 76 0 127 3 grcA Autonomous glycyl radical cofactor Salmonella typhi
B4TS28 1.83e-68 204 76 0 127 3 grcA Autonomous glycyl radical cofactor Salmonella schwarzengrund (strain CVM19633)
B5BAR8 1.83e-68 204 76 0 127 3 grcA Autonomous glycyl radical cofactor Salmonella paratyphi A (strain AKU_12601)
C0PVZ1 1.83e-68 204 76 0 127 3 grcA Autonomous glycyl radical cofactor Salmonella paratyphi C (strain RKS4594)
A9N0W4 1.83e-68 204 76 0 127 3 grcA Autonomous glycyl radical cofactor Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
Q5PLH7 1.83e-68 204 76 0 127 3 grcA Autonomous glycyl radical cofactor Salmonella paratyphi A (strain ATCC 9150 / SARB42)
B4T289 1.83e-68 204 76 0 127 3 grcA Autonomous glycyl radical cofactor Salmonella newport (strain SL254)
B4TE27 1.83e-68 204 76 0 127 3 grcA Autonomous glycyl radical cofactor Salmonella heidelberg (strain SL476)
B5RD61 1.83e-68 204 76 0 127 3 grcA Autonomous glycyl radical cofactor Salmonella gallinarum (strain 287/91 / NCTC 13346)
B5QTW0 1.83e-68 204 76 0 127 3 grcA Autonomous glycyl radical cofactor Salmonella enteritidis PT4 (strain P125109)
Q57L55 1.83e-68 204 76 0 127 3 grcA Autonomous glycyl radical cofactor Salmonella choleraesuis (strain SC-B67)
A9MGW0 1.83e-68 204 76 0 127 3 grcA Autonomous glycyl radical cofactor Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980)
B5F227 1.83e-68 204 76 0 127 3 grcA Autonomous glycyl radical cofactor Salmonella agona (strain SL483)
B5FRD8 3.46e-68 204 76 0 127 3 grcA Autonomous glycyl radical cofactor Salmonella dublin (strain CT_02021853)
B7LUY6 5.19e-68 203 77 0 127 3 grcA Autonomous glycyl radical cofactor Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CCUG 18766 / IAM 14443 / JCM 21226 / LMG 7866 / NBRC 102419 / NCTC 12128 / CDC 0568-73)
C5BAK4 5.19e-68 203 77 0 127 3 grcA Autonomous glycyl radical cofactor Edwardsiella ictaluri (strain 93-146)
B1LP92 5.19e-68 203 77 0 127 3 grcA Autonomous glycyl radical cofactor Escherichia coli (strain SMS-3-5 / SECEC)
B7N6H0 5.19e-68 203 77 0 127 3 grcA Autonomous glycyl radical cofactor Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC)
Q8FF10 5.19e-68 203 77 0 127 3 grcA Autonomous glycyl radical cofactor Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q0TEQ9 5.19e-68 203 77 0 127 3 grcA Autonomous glycyl radical cofactor Escherichia coli O6:K15:H31 (strain 536 / UPEC)
A1AEA9 5.19e-68 203 77 0 127 3 grcA Autonomous glycyl radical cofactor Escherichia coli O1:K1 / APEC
B7NRN5 5.19e-68 203 77 0 127 3 grcA Autonomous glycyl radical cofactor Escherichia coli O7:K1 (strain IAI39 / ExPEC)
B7MIR4 5.19e-68 203 77 0 127 3 grcA Autonomous glycyl radical cofactor Escherichia coli O45:K1 (strain S88 / ExPEC)
B7UH18 5.19e-68 203 77 0 127 3 grcA Autonomous glycyl radical cofactor Escherichia coli O127:H6 (strain E2348/69 / EPEC)
Q0T1S7 5.79e-68 203 77 0 127 3 grcA Autonomous glycyl radical cofactor Shigella flexneri serotype 5b (strain 8401)
A8AD08 7.87e-68 203 76 0 127 3 grcA Autonomous glycyl radical cofactor Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)
A4WDE8 8.31e-68 203 76 0 127 3 grcA Autonomous glycyl radical cofactor Enterobacter sp. (strain 638)
A6VLV5 6.05e-67 201 74 0 127 3 grcA Autonomous glycyl radical cofactor Actinobacillus succinogenes (strain ATCC 55618 / DSM 22257 / CCUG 43843 / 130Z)
P44455 9.92e-66 197 73 0 127 1 grcA Autonomous glycyl radical cofactor Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
A5UFJ0 9.92e-66 197 73 0 127 3 grcA Autonomous glycyl radical cofactor Haemophilus influenzae (strain PittGG)
A5UBC1 4.41e-65 196 72 0 127 3 grcA Autonomous glycyl radical cofactor Haemophilus influenzae (strain PittEE)
Q4QPM7 4.41e-65 196 72 0 127 3 grcA Autonomous glycyl radical cofactor Haemophilus influenzae (strain 86-028NP)
Q9CPH6 1.9e-64 194 72 0 127 3 grcA Autonomous glycyl radical cofactor Pasteurella multocida (strain Pm70)
Q65VN1 5.74e-64 193 71 0 127 3 grcA Autonomous glycyl radical cofactor Mannheimia succiniciproducens (strain KCTC 0769BP / MBEL55E)
B0UWA8 1.11e-63 192 70 0 127 3 grcA Autonomous glycyl radical cofactor Histophilus somni (strain 2336)
Q0I272 1.11e-63 192 70 0 127 3 grcA Autonomous glycyl radical cofactor Histophilus somni (strain 129Pt)
B8F6C4 1.29e-63 192 70 0 127 3 grcA Autonomous glycyl radical cofactor Glaesserella parasuis serovar 5 (strain SH0165)
B0BTB3 2.91e-63 191 71 1 128 3 grcA Autonomous glycyl radical cofactor Actinobacillus pleuropneumoniae serotype 3 (strain JL03)
B3H0M3 2.91e-63 191 71 1 128 3 grcA Autonomous glycyl radical cofactor Actinobacillus pleuropneumoniae serotype 7 (strain AP76)
A3MZ79 2.91e-63 191 71 1 128 3 grcA Autonomous glycyl radical cofactor Actinobacillus pleuropneumoniae serotype 5b (strain L20)
B2VED1 3.87e-62 189 70 0 127 3 grcA Autonomous glycyl radical cofactor Erwinia tasmaniensis (strain DSM 17950 / CFBP 7177 / CIP 109463 / NCPPB 4357 / Et1/99)
Q7VMC2 6.91e-62 188 70 1 128 3 grcA Autonomous glycyl radical cofactor Haemophilus ducreyi (strain 35000HP / ATCC 700724)
Q7MNR2 1.65e-61 187 72 1 127 3 grcA Autonomous glycyl radical cofactor Vibrio vulnificus (strain YJ016)
Q8DEP5 1.65e-61 187 72 1 127 3 grcA Autonomous glycyl radical cofactor Vibrio vulnificus (strain CMCP6)
Q87SC7 4.09e-60 183 69 1 127 3 grcA Autonomous glycyl radical cofactor Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
C3LQD3 6.7e-60 183 71 1 127 3 grcA Autonomous glycyl radical cofactor Vibrio cholerae serotype O1 (strain M66-2)
Q9KPK6 6.7e-60 183 71 1 127 3 grcA Autonomous glycyl radical cofactor Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
A5F5R7 6.7e-60 183 71 1 127 3 grcA Autonomous glycyl radical cofactor Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)
A7MS83 8.34e-60 182 69 1 127 3 grcA Autonomous glycyl radical cofactor Vibrio campbellii (strain ATCC BAA-1116)
B7VJ50 1.46e-59 182 70 1 127 3 grcA Autonomous glycyl radical cofactor Vibrio atlanticus (strain LGP32)
A1SUE3 9.82e-59 180 68 2 127 3 grcA Autonomous glycyl radical cofactor Psychromonas ingrahamii (strain DSM 17664 / CCUG 51855 / 37)
Q6LUP6 2.12e-58 179 67 1 127 3 grcA Autonomous glycyl radical cofactor Photobacterium profundum (strain SS9)
B6EKY5 2.66e-57 176 66 1 127 3 grcA Autonomous glycyl radical cofactor Aliivibrio salmonicida (strain LFI1238)
B5FAJ9 3.82e-57 176 66 1 127 3 grcA Autonomous glycyl radical cofactor Aliivibrio fischeri (strain MJ11)
Q5E2Y6 3.82e-57 176 66 1 127 3 grcA Autonomous glycyl radical cofactor Aliivibrio fischeri (strain ATCC 700601 / ES114)
P13316 6.07e-42 137 69 1 100 3 grcA Autonomous glycyl radical cofactor Enterobacteria phage T4
P09373 2.79e-26 105 78 0 61 1 pflB Formate acetyltransferase 1 Escherichia coli (strain K12)
P42632 3.16e-26 105 78 0 61 1 tdcE PFL-like enzyme TdcE Escherichia coli (strain K12)
P43753 4.04e-26 105 80 0 61 3 pflB Formate acetyltransferase Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P37836 1.31e-21 88 74 0 55 2 PFL Formate acetyltransferase (Fragment) Chlamydomonas reinhardtii
Q5HKH9 1.14e-20 89 67 0 61 3 pflB Formate acetyltransferase Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)
Q8CTX6 1.16e-20 89 67 0 61 3 pflB Formate acetyltransferase Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200)
Q7A1W9 1.37e-20 89 70 0 58 3 pflB Formate acetyltransferase Staphylococcus aureus (strain MW2)
Q6GCQ0 1.37e-20 89 70 0 58 3 pflB Formate acetyltransferase Staphylococcus aureus (strain MSSA476)
Q6GK90 1.37e-20 89 70 0 58 3 pflB Formate acetyltransferase Staphylococcus aureus (strain MRSA252)
Q7A7X6 1.37e-20 89 70 0 58 1 pflB Formate acetyltransferase Staphylococcus aureus (strain N315)
Q99WZ7 1.37e-20 89 70 0 58 3 pflB Formate acetyltransferase Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q5HJF4 1.37e-20 89 70 0 58 1 pflB Formate acetyltransferase Staphylococcus aureus (strain COL)
Q2YV53 1.37e-20 89 70 0 58 3 pflB Formate acetyltransferase Staphylococcus aureus (strain bovine RF122 / ET3-1)
Q2G1D8 1.37e-20 89 70 0 58 3 pflB Formate acetyltransferase Staphylococcus aureus (strain NCTC 8325 / PS 47)
Q2FK44 1.37e-20 89 70 0 58 3 pflB Formate acetyltransferase Staphylococcus aureus (strain USA300)
Q46266 5.19e-19 84 63 0 60 3 pfl Formate acetyltransferase Clostridium pasteurianum
P75793 1.25e-11 63 48 0 56 3 ybiW Probable dehydratase YbiW Escherichia coli (strain K12)
Q312S2 5.46e-08 53 47 0 51 2 islA Isethionate sulfite-lyase Oleidesulfovibrio alaskensis (strain ATCC BAA-1058 / DSM 17464 / G20)
Q727N1 5.68e-08 53 47 0 51 1 iseG Isethionate sulfite-lyase Nitratidesulfovibrio vulgaris (strain ATCC 29579 / DSM 644 / CCUG 34227 / NCIMB 8303 / VKM B-1760 / Hildenborough)
E5Y378 6.25e-08 53 45 0 51 1 islA Isethionate sulfite-lyase Bilophila wadsworthia (strain 3_1_6)
A0A100YXA1 8.06e-07 50 40 0 54 1 AUL39_03420 Indoleacetate decarboxylase Tractidigestivibacter scatoligenes
Q84F16 9.52e-07 49 43 0 55 1 hpdB 4-hydroxyphenylacetate decarboxylase glycyl radical subunit Clostridioides difficile
Q18CP5 9.52e-07 49 43 0 55 3 hpdB 4-hydroxyphenylacetate decarboxylase glycyl radical subunit Clostridioides difficile (strain 630)
C9YHW1 9.62e-07 49 43 0 55 3 hpdB 4-hydroxyphenylacetate decarboxylase glycyl radical subunit Clostridioides difficile (strain R20291)
C9XIS5 9.62e-07 49 43 0 55 3 hpdB 4-hydroxyphenylacetate decarboxylase glycyl radical subunit Clostridioides difficile (strain CD196)
E5Y7I4 1.21e-06 49 41 0 56 1 hpsG (2S)-3-sulfopropanediol sulfolyase Bilophila wadsworthia (strain 3_1_6)
B8J0R1 1.25e-06 49 43 0 51 1 islA Isethionate sulfite-lyase Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949 / MB)
Q30W70 3.63e-06 48 41 0 55 1 cutC Choline trimethylamine-lyase Oleidesulfovibrio alaskensis (strain ATCC BAA-1058 / DSM 17464 / G20)
P32674 3.63e-06 48 42 0 52 3 pflD Probable dehydratase PflD Escherichia coli (strain K12)
A0A031WDE4 7.08e-06 47 37 0 53 1 pflD Trans-4-hydroxy-L-proline dehydratase Clostridioides difficile
O32797 7.17e-05 44 38 1 54 3 pfl Formate acetyltransferase Lactococcus lactis subsp. lactis (strain IL1403)
O32799 7.24e-05 44 38 1 54 3 pfl Formate acetyltransferase Lactococcus lactis subsp. cremoris (strain MG1363)
Q38HX4 7.83e-05 44 40 0 55 1 csdB 4-hydroxyphenylacetate decarboxylase glycyl radical subunit Clostridium scatologenes
A0A318FL05 0.000374 42 35 0 51 1 hpfG (2S)-3-sulfopropanediol dehydratase Klebsiella oxytoca
Q59934 0.000619 41 38 1 55 3 pfl Formate acetyltransferase Streptococcus mutans serotype c (strain ATCC 700610 / UA159)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS01925
Feature type CDS
Gene grcA
Product autonomous glycyl radical cofactor GrcA
Location 421381 - 421764 (strand: 1)
Length 384 (nucleotides) / 127 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_567
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01228 Glycine radical

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3445 Coenzyme transport and metabolism (H) H Autonomous glycyl radical cofactor GrcA

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K06866 autonomous glycyl radical cofactor - -

Protein Sequence

MITGIQITKSDNAALLNSFWLLDDSKDEARCICAKEKYADGDVVSRAELGPFEYREVNLQAQPTVRVEGGQHLNVNVLRRETLQDAVDHPEKYPQLTIRVSGYAVRFNSLTPEQQRDVIARTFTASL

Flanking regions ( +/- flanking 50bp)

ACTTTAAATGACAATCGATAAATTGATATCGAACCAACCCGGAGGTCACTATGATTACTGGTATCCAAATTACTAAATCTGACAATGCTGCACTGCTGAACTCTTTCTGGCTGCTGGATGACAGCAAAGATGAAGCCCGTTGCATCTGTGCCAAAGAAAAATATGCAGACGGTGATGTTGTTTCCCGTGCGGAATTAGGCCCTTTTGAGTATCGTGAAGTTAATCTTCAGGCTCAGCCGACCGTTCGCGTTGAAGGTGGTCAGCATCTGAACGTTAACGTTCTGCGCCGTGAAACACTGCAGGATGCGGTTGATCATCCTGAAAAATACCCGCAGTTAACTATCCGTGTTTCTGGTTATGCAGTGCGTTTTAACTCACTGACTCCTGAACAGCAGCGCGATGTTATTGCCCGTACTTTTACAGCAAGCCTGTAATTGTACCTGTAACTACCGTTATGTTAAAAACCACGCTTCGGCGTGGTTTT