COG3445


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG3445, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Autonomous glycyl radical cofactor GrcA
Function(s) descr. Coenzyme transport and metabolism (H)

Occurence in the database

COG3445 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_567 FBDBKF_01480 294880 295263 -1 grcA autonomous glycyl radical cofactor GrcA Morganella morganii S1
1 group_567 EHELCC_00065 13605 13988 1 grcA autonomous glycyl radical cofactor GrcA Morganella morganii S2
2 group_567 NLDBIP_03395 666148 666531 -1 grcA autonomous glycyl radical cofactor GrcA Morganella morganii S4
3 group_567 LHKJJB_04910 273389 273772 -1 grcA autonomous glycyl radical cofactor GrcA Morganella morganii S3
4 group_567 HKOGLL_02135 13810 14193 1 grcA autonomous glycyl radical cofactor GrcA Morganella morganii S5
5 group_567 F4V73_RS01925 421381 421764 1 grcA autonomous glycyl radical cofactor GrcA Morganella psychrotolerans
6 group_567 PMI_RS09365 2044027 2044410 -1 grcA autonomous glycyl radical cofactor GrcA Proteus mirabilis HI4320