Homologs in group_567

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_01480 FBDBKF_01480 75.6 Morganella morganii S1 grcA autonomous glycyl radical cofactor GrcA
EHELCC_00065 EHELCC_00065 75.6 Morganella morganii S2 grcA autonomous glycyl radical cofactor GrcA
NLDBIP_03395 NLDBIP_03395 75.6 Morganella morganii S4 grcA autonomous glycyl radical cofactor GrcA
LHKJJB_04910 LHKJJB_04910 75.6 Morganella morganii S3 grcA autonomous glycyl radical cofactor GrcA
HKOGLL_02135 HKOGLL_02135 75.6 Morganella morganii S5 grcA autonomous glycyl radical cofactor GrcA
F4V73_RS01925 F4V73_RS01925 77.2 Morganella psychrotolerans grcA autonomous glycyl radical cofactor GrcA

Distribution of the homologs in the orthogroup group_567

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_567

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
B4F057 1.05e-91 263 100 0 127 3 grcA Autonomous glycyl radical cofactor Proteus mirabilis (strain HI4320)
B7LUY6 3.32e-74 219 84 0 127 3 grcA Autonomous glycyl radical cofactor Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CCUG 18766 / IAM 14443 / JCM 21226 / LMG 7866 / NBRC 102419 / NCTC 12128 / CDC 0568-73)
B1LP92 3.32e-74 219 84 0 127 3 grcA Autonomous glycyl radical cofactor Escherichia coli (strain SMS-3-5 / SECEC)
B7N6H0 3.32e-74 219 84 0 127 3 grcA Autonomous glycyl radical cofactor Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC)
Q8FF10 3.32e-74 219 84 0 127 3 grcA Autonomous glycyl radical cofactor Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q0TEQ9 3.32e-74 219 84 0 127 3 grcA Autonomous glycyl radical cofactor Escherichia coli O6:K15:H31 (strain 536 / UPEC)
A1AEA9 3.32e-74 219 84 0 127 3 grcA Autonomous glycyl radical cofactor Escherichia coli O1:K1 / APEC
B7NRN5 3.32e-74 219 84 0 127 3 grcA Autonomous glycyl radical cofactor Escherichia coli O7:K1 (strain IAI39 / ExPEC)
B7MIR4 3.32e-74 219 84 0 127 3 grcA Autonomous glycyl radical cofactor Escherichia coli O45:K1 (strain S88 / ExPEC)
B7UH18 3.32e-74 219 84 0 127 3 grcA Autonomous glycyl radical cofactor Escherichia coli O127:H6 (strain E2348/69 / EPEC)
Q3YYT6 9.02e-74 218 83 0 127 3 grcA Autonomous glycyl radical cofactor Shigella sonnei (strain Ss046)
Q31XQ5 9.02e-74 218 83 0 127 3 grcA Autonomous glycyl radical cofactor Shigella boydii serotype 4 (strain Sb227)
B2TYK2 9.02e-74 218 83 0 127 3 grcA Autonomous glycyl radical cofactor Shigella boydii serotype 18 (strain CDC 3083-94 / BS512)
B6I5F4 9.02e-74 218 83 0 127 3 grcA Autonomous glycyl radical cofactor Escherichia coli (strain SE11)
P68066 9.02e-74 218 83 0 127 1 grcA Autonomous glycyl radical cofactor Escherichia coli (strain K12)
B1IVP8 9.02e-74 218 83 0 127 3 grcA Autonomous glycyl radical cofactor Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks)
A8A391 9.02e-74 218 83 0 127 3 grcA Autonomous glycyl radical cofactor Escherichia coli O9:H4 (strain HS)
B1XBQ6 9.02e-74 218 83 0 127 3 grcA Autonomous glycyl radical cofactor Escherichia coli (strain K12 / DH10B)
C4ZYK2 9.02e-74 218 83 0 127 3 grcA Autonomous glycyl radical cofactor Escherichia coli (strain K12 / MC4100 / BW2952)
B7M8J4 9.02e-74 218 83 0 127 3 grcA Autonomous glycyl radical cofactor Escherichia coli O8 (strain IAI1)
B7MYL2 9.02e-74 218 83 0 127 3 grcA Autonomous glycyl radical cofactor Escherichia coli O81 (strain ED1a)
B5Z153 9.02e-74 218 83 0 127 3 grcA Autonomous glycyl radical cofactor Escherichia coli O157:H7 (strain EC4115 / EHEC)
P68067 9.02e-74 218 83 0 127 3 grcA Autonomous glycyl radical cofactor Escherichia coli O157:H7
B7LDH2 9.02e-74 218 83 0 127 3 grcA Autonomous glycyl radical cofactor Escherichia coli (strain 55989 / EAEC)
A7ZQ24 9.02e-74 218 83 0 127 3 grcA Autonomous glycyl radical cofactor Escherichia coli O139:H28 (strain E24377A / ETEC)
A8AD08 1.12e-73 218 82 0 127 3 grcA Autonomous glycyl radical cofactor Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)
Q0T1S7 1.16e-73 218 83 0 127 3 grcA Autonomous glycyl radical cofactor Shigella flexneri serotype 5b (strain 8401)
B1JRB2 1.54e-73 218 81 0 127 3 grcA Autonomous glycyl radical cofactor Yersinia pseudotuberculosis serotype O:3 (strain YPIII)
Q667T8 1.54e-73 218 81 0 127 3 grcA Autonomous glycyl radical cofactor Yersinia pseudotuberculosis serotype I (strain IP32953)
A4TKZ1 1.54e-73 218 81 0 127 3 grcA Autonomous glycyl radical cofactor Yersinia pestis (strain Pestoides F)
Q1CKF7 1.54e-73 218 81 0 127 3 grcA Autonomous glycyl radical cofactor Yersinia pestis bv. Antiqua (strain Nepal516)
A9R3Y7 1.54e-73 218 81 0 127 3 grcA Autonomous glycyl radical cofactor Yersinia pestis bv. Antiqua (strain Angola)
Q8ZD84 1.54e-73 218 81 0 127 3 grcA Autonomous glycyl radical cofactor Yersinia pestis
B2KA62 1.54e-73 218 81 0 127 3 grcA Autonomous glycyl radical cofactor Yersinia pseudotuberculosis serotype IB (strain PB1/+)
Q1C569 1.54e-73 218 81 0 127 3 grcA Autonomous glycyl radical cofactor Yersinia pestis bv. Antiqua (strain Antiqua)
A7FFS5 1.54e-73 218 81 0 127 3 grcA Autonomous glycyl radical cofactor Yersinia pseudotuberculosis serotype O:1b (strain IP 31758)
Q7CQ05 1.69e-73 217 82 0 127 3 grcA Autonomous glycyl radical cofactor Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q8XFE0 1.69e-73 217 82 0 127 3 grcA Autonomous glycyl radical cofactor Salmonella typhi
B4TS28 1.69e-73 217 82 0 127 3 grcA Autonomous glycyl radical cofactor Salmonella schwarzengrund (strain CVM19633)
B5BAR8 1.69e-73 217 82 0 127 3 grcA Autonomous glycyl radical cofactor Salmonella paratyphi A (strain AKU_12601)
C0PVZ1 1.69e-73 217 82 0 127 3 grcA Autonomous glycyl radical cofactor Salmonella paratyphi C (strain RKS4594)
A9N0W4 1.69e-73 217 82 0 127 3 grcA Autonomous glycyl radical cofactor Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
Q5PLH7 1.69e-73 217 82 0 127 3 grcA Autonomous glycyl radical cofactor Salmonella paratyphi A (strain ATCC 9150 / SARB42)
B4T289 1.69e-73 217 82 0 127 3 grcA Autonomous glycyl radical cofactor Salmonella newport (strain SL254)
B4TE27 1.69e-73 217 82 0 127 3 grcA Autonomous glycyl radical cofactor Salmonella heidelberg (strain SL476)
B5RD61 1.69e-73 217 82 0 127 3 grcA Autonomous glycyl radical cofactor Salmonella gallinarum (strain 287/91 / NCTC 13346)
B5QTW0 1.69e-73 217 82 0 127 3 grcA Autonomous glycyl radical cofactor Salmonella enteritidis PT4 (strain P125109)
Q57L55 1.69e-73 217 82 0 127 3 grcA Autonomous glycyl radical cofactor Salmonella choleraesuis (strain SC-B67)
A9MGW0 1.69e-73 217 82 0 127 3 grcA Autonomous glycyl radical cofactor Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980)
B5F227 1.69e-73 217 82 0 127 3 grcA Autonomous glycyl radical cofactor Salmonella agona (strain SL483)
B5FRD8 3.15e-73 217 82 0 127 3 grcA Autonomous glycyl radical cofactor Salmonella dublin (strain CT_02021853)
Q32CU0 3.67e-73 216 83 0 127 3 grcA Autonomous glycyl radical cofactor Shigella dysenteriae serotype 1 (strain Sd197)
Q83K21 8.36e-73 216 82 0 127 3 grcA Autonomous glycyl radical cofactor Shigella flexneri
A1JKI9 1.56e-72 215 79 0 127 3 grcA Autonomous glycyl radical cofactor Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)
A6TCJ1 3.64e-72 214 81 0 127 3 grcA Autonomous glycyl radical cofactor Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
B5XNF9 3.64e-72 214 81 0 127 3 grcA Autonomous glycyl radical cofactor Klebsiella pneumoniae (strain 342)
A7MH19 8.75e-72 213 80 0 127 3 grcA Autonomous glycyl radical cofactor Cronobacter sakazakii (strain ATCC BAA-894)
A4WDE8 9.66e-72 213 80 0 127 3 grcA Autonomous glycyl radical cofactor Enterobacter sp. (strain 638)
Q9CPH6 2.74e-71 212 79 0 127 3 grcA Autonomous glycyl radical cofactor Pasteurella multocida (strain Pm70)
P44455 1.58e-70 210 79 0 127 1 grcA Autonomous glycyl radical cofactor Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
A5UFJ0 1.58e-70 210 79 0 127 3 grcA Autonomous glycyl radical cofactor Haemophilus influenzae (strain PittGG)
B0UWA8 2.71e-70 209 77 0 127 3 grcA Autonomous glycyl radical cofactor Histophilus somni (strain 2336)
Q0I272 2.71e-70 209 77 0 127 3 grcA Autonomous glycyl radical cofactor Histophilus somni (strain 129Pt)
A8GI38 4.96e-70 209 78 0 127 3 grcA Autonomous glycyl radical cofactor Serratia proteamaculans (strain 568)
A5UBC1 9.47e-70 208 78 0 127 3 grcA Autonomous glycyl radical cofactor Haemophilus influenzae (strain PittEE)
Q4QPM7 9.47e-70 208 78 0 127 3 grcA Autonomous glycyl radical cofactor Haemophilus influenzae (strain 86-028NP)
Q65VN1 1.83e-69 207 77 0 127 3 grcA Autonomous glycyl radical cofactor Mannheimia succiniciproducens (strain KCTC 0769BP / MBEL55E)
P18953 1.93e-69 207 77 0 127 2 grcA Autonomous glycyl radical cofactor Serratia liquefaciens
B2VED1 2.43e-69 207 76 0 127 3 grcA Autonomous glycyl radical cofactor Erwinia tasmaniensis (strain DSM 17950 / CFBP 7177 / CIP 109463 / NCPPB 4357 / Et1/99)
C6DC10 1.75e-68 204 75 0 127 3 grcA Autonomous glycyl radical cofactor Pectobacterium carotovorum subsp. carotovorum (strain PC1)
A6VLV5 2.25e-68 204 76 0 127 3 grcA Autonomous glycyl radical cofactor Actinobacillus succinogenes (strain ATCC 55618 / DSM 22257 / CCUG 43843 / 130Z)
Q6D209 2.78e-68 204 74 0 127 3 grcA Autonomous glycyl radical cofactor Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672)
C5BAK4 3.46e-68 204 77 0 127 3 grcA Autonomous glycyl radical cofactor Edwardsiella ictaluri (strain 93-146)
B8F6C4 8.32e-67 200 74 0 127 3 grcA Autonomous glycyl radical cofactor Glaesserella parasuis serovar 5 (strain SH0165)
Q7VMC2 4.86e-65 196 72 1 128 3 grcA Autonomous glycyl radical cofactor Haemophilus ducreyi (strain 35000HP / ATCC 700724)
C3LQD3 9.1e-65 195 76 1 127 3 grcA Autonomous glycyl radical cofactor Vibrio cholerae serotype O1 (strain M66-2)
Q9KPK6 9.1e-65 195 76 1 127 3 grcA Autonomous glycyl radical cofactor Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
A5F5R7 9.1e-65 195 76 1 127 3 grcA Autonomous glycyl radical cofactor Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)
B0BTB3 9.81e-65 195 73 1 128 3 grcA Autonomous glycyl radical cofactor Actinobacillus pleuropneumoniae serotype 3 (strain JL03)
B3H0M3 9.81e-65 195 73 1 128 3 grcA Autonomous glycyl radical cofactor Actinobacillus pleuropneumoniae serotype 7 (strain AP76)
A3MZ79 9.81e-65 195 73 1 128 3 grcA Autonomous glycyl radical cofactor Actinobacillus pleuropneumoniae serotype 5b (strain L20)
Q7MNR2 5.74e-64 193 74 1 127 3 grcA Autonomous glycyl radical cofactor Vibrio vulnificus (strain YJ016)
Q8DEP5 5.74e-64 193 74 1 127 3 grcA Autonomous glycyl radical cofactor Vibrio vulnificus (strain CMCP6)
B7VJ50 1.18e-62 190 74 1 127 3 grcA Autonomous glycyl radical cofactor Vibrio atlanticus (strain LGP32)
Q87SC7 1.29e-62 190 72 1 127 3 grcA Autonomous glycyl radical cofactor Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
B6EKY5 2.73e-62 189 71 1 127 3 grcA Autonomous glycyl radical cofactor Aliivibrio salmonicida (strain LFI1238)
A7MS83 2.01e-61 187 71 1 127 3 grcA Autonomous glycyl radical cofactor Vibrio campbellii (strain ATCC BAA-1116)
B5FAJ9 3.07e-61 186 70 1 127 3 grcA Autonomous glycyl radical cofactor Aliivibrio fischeri (strain MJ11)
Q5E2Y6 3.07e-61 186 70 1 127 3 grcA Autonomous glycyl radical cofactor Aliivibrio fischeri (strain ATCC 700601 / ES114)
Q6LUP6 6.92e-61 185 71 1 127 3 grcA Autonomous glycyl radical cofactor Photobacterium profundum (strain SS9)
A1SUE3 2.91e-57 176 68 2 127 3 grcA Autonomous glycyl radical cofactor Psychromonas ingrahamii (strain DSM 17664 / CCUG 51855 / 37)
P13316 9.72e-42 137 65 0 103 3 grcA Autonomous glycyl radical cofactor Enterobacteria phage T4
P43753 5.7e-28 110 85 0 61 3 pflB Formate acetyltransferase Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P09373 1.19e-27 109 81 0 61 1 pflB Formate acetyltransferase 1 Escherichia coli (strain K12)
P42632 2.14e-25 103 77 0 61 1 tdcE PFL-like enzyme TdcE Escherichia coli (strain K12)
Q46266 4.28e-22 93 50 2 102 3 pfl Formate acetyltransferase Clostridium pasteurianum
Q8CTX6 4.33e-20 87 67 0 61 3 pflB Formate acetyltransferase Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200)
Q5HKH9 4.51e-20 87 67 0 61 3 pflB Formate acetyltransferase Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)
Q7A1W9 5.74e-20 87 67 0 61 3 pflB Formate acetyltransferase Staphylococcus aureus (strain MW2)
Q6GCQ0 5.74e-20 87 67 0 61 3 pflB Formate acetyltransferase Staphylococcus aureus (strain MSSA476)
Q6GK90 5.74e-20 87 67 0 61 3 pflB Formate acetyltransferase Staphylococcus aureus (strain MRSA252)
Q7A7X6 5.74e-20 87 67 0 61 1 pflB Formate acetyltransferase Staphylococcus aureus (strain N315)
Q99WZ7 5.74e-20 87 67 0 61 3 pflB Formate acetyltransferase Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q5HJF4 5.74e-20 87 67 0 61 1 pflB Formate acetyltransferase Staphylococcus aureus (strain COL)
Q2YV53 5.74e-20 87 67 0 61 3 pflB Formate acetyltransferase Staphylococcus aureus (strain bovine RF122 / ET3-1)
Q2G1D8 5.74e-20 87 67 0 61 3 pflB Formate acetyltransferase Staphylococcus aureus (strain NCTC 8325 / PS 47)
Q2FK44 5.74e-20 87 67 0 61 3 pflB Formate acetyltransferase Staphylococcus aureus (strain USA300)
P37836 8.69e-20 83 66 0 59 2 PFL Formate acetyltransferase (Fragment) Chlamydomonas reinhardtii
P75793 4.26e-11 62 46 0 56 3 ybiW Probable dehydratase YbiW Escherichia coli (strain K12)
E5Y378 3.67e-08 53 43 0 51 1 islA Isethionate sulfite-lyase Bilophila wadsworthia (strain 3_1_6)
Q312S2 3.93e-08 53 45 0 51 2 islA Isethionate sulfite-lyase Oleidesulfovibrio alaskensis (strain ATCC BAA-1058 / DSM 17464 / G20)
Q727N1 4.01e-08 53 45 0 51 1 iseG Isethionate sulfite-lyase Nitratidesulfovibrio vulgaris (strain ATCC 29579 / DSM 644 / CCUG 34227 / NCIMB 8303 / VKM B-1760 / Hildenborough)
E5Y7I4 5.24e-07 50 41 0 51 1 hpsG (2S)-3-sulfopropanediol sulfolyase Bilophila wadsworthia (strain 3_1_6)
Q84F16 5.99e-07 50 43 0 55 1 hpdB 4-hydroxyphenylacetate decarboxylase glycyl radical subunit Clostridioides difficile
C9YHW1 6.05e-07 50 43 0 55 3 hpdB 4-hydroxyphenylacetate decarboxylase glycyl radical subunit Clostridioides difficile (strain R20291)
C9XIS5 6.05e-07 50 43 0 55 3 hpdB 4-hydroxyphenylacetate decarboxylase glycyl radical subunit Clostridioides difficile (strain CD196)
Q18CP5 6.05e-07 50 43 0 55 3 hpdB 4-hydroxyphenylacetate decarboxylase glycyl radical subunit Clostridioides difficile (strain 630)
B8J0R1 8.18e-07 50 41 0 51 1 islA Isethionate sulfite-lyase Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949 / MB)
A0A031WDE4 2.16e-06 48 39 0 53 1 pflD Trans-4-hydroxy-L-proline dehydratase Clostridioides difficile
P32674 2.77e-06 48 42 0 52 3 pflD Probable dehydratase PflD Escherichia coli (strain K12)
A0A100YXA1 5.1e-06 47 35 0 59 1 AUL39_03420 Indoleacetate decarboxylase Tractidigestivibacter scatoligenes
Q30W70 2.43e-05 45 37 0 59 1 cutC Choline trimethylamine-lyase Oleidesulfovibrio alaskensis (strain ATCC BAA-1058 / DSM 17464 / G20)
Q59934 2.84e-05 45 38 1 59 3 pfl Formate acetyltransferase Streptococcus mutans serotype c (strain ATCC 700610 / UA159)
A0A318FL05 4.36e-05 45 37 0 51 1 hpfG (2S)-3-sulfopropanediol dehydratase Klebsiella oxytoca
Q38HX4 4.57e-05 45 40 0 55 1 csdB 4-hydroxyphenylacetate decarboxylase glycyl radical subunit Clostridium scatologenes
O32797 5.17e-05 44 37 1 59 3 pfl Formate acetyltransferase Lactococcus lactis subsp. lactis (strain IL1403)
O32799 5.32e-05 44 37 1 59 3 pfl Formate acetyltransferase Lactococcus lactis subsp. cremoris (strain MG1363)
O87943 0.000688 41 38 0 50 1 bssA Benzylsuccinate synthase alpha subunit Thauera aromatica

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS09365
Feature type CDS
Gene grcA
Product autonomous glycyl radical cofactor GrcA
Location 2044027 - 2044410 (strand: -1)
Length 384 (nucleotides) / 127 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_567
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01228 Glycine radical

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3445 Coenzyme transport and metabolism (H) H Autonomous glycyl radical cofactor GrcA

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K06866 autonomous glycyl radical cofactor - -

Protein Sequence

MITGIQITKADNDDLLHSFWLLDDENGEARCICAKKGFEEGQVVSRDALGNIEYREVPVESKPVVRVEGGQHLNVNVLSRETLEDAVNNPEKYPQLTIRVSGYAVRFNSLTPEQQRDVITRTFTESL

Flanking regions ( +/- flanking 50bp)

ATTCTGATATGCCATTAGAATTTGATTTTGTGCCCACATTGGAGGTCGAAATGATTACTGGTATCCAAATTACTAAAGCTGATAACGACGATTTATTACATTCTTTTTGGTTGTTAGATGATGAAAACGGCGAAGCACGTTGTATTTGTGCGAAAAAAGGCTTTGAAGAAGGCCAAGTTGTTAGCCGTGATGCATTAGGCAACATCGAATACCGTGAAGTACCGGTAGAATCTAAACCGGTAGTACGTGTAGAAGGTGGTCAACATCTAAACGTCAACGTATTAAGTCGTGAAACATTAGAAGATGCCGTTAACAATCCTGAGAAATATCCTCAATTGACTATTCGTGTATCCGGCTATGCAGTGCGTTTTAACTCACTGACACCAGAACAACAACGTGATGTAATTACTCGTACTTTCACTGAAAGCCTGTAATTTTCACTAAAAATTATTAAGTAATGATAGAACCTGGTATGTTTATATCA