Homologs in group_567

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_01480 FBDBKF_01480 100.0 Morganella morganii S1 grcA autonomous glycyl radical cofactor GrcA
EHELCC_00065 EHELCC_00065 100.0 Morganella morganii S2 grcA autonomous glycyl radical cofactor GrcA
LHKJJB_04910 LHKJJB_04910 100.0 Morganella morganii S3 grcA autonomous glycyl radical cofactor GrcA
HKOGLL_02135 HKOGLL_02135 100.0 Morganella morganii S5 grcA autonomous glycyl radical cofactor GrcA
F4V73_RS01925 F4V73_RS01925 92.9 Morganella psychrotolerans grcA autonomous glycyl radical cofactor GrcA
PMI_RS09365 PMI_RS09365 75.6 Proteus mirabilis HI4320 grcA autonomous glycyl radical cofactor GrcA

Distribution of the homologs in the orthogroup group_567

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_567

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P18953 7.91e-73 216 81 0 127 2 grcA Autonomous glycyl radical cofactor Serratia liquefaciens
A1JKI9 1.12e-72 215 79 0 127 3 grcA Autonomous glycyl radical cofactor Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)
A8GI38 3.05e-71 212 79 0 127 3 grcA Autonomous glycyl radical cofactor Serratia proteamaculans (strain 568)
B1JRB2 1.69e-70 210 77 0 127 3 grcA Autonomous glycyl radical cofactor Yersinia pseudotuberculosis serotype O:3 (strain YPIII)
Q667T8 1.69e-70 210 77 0 127 3 grcA Autonomous glycyl radical cofactor Yersinia pseudotuberculosis serotype I (strain IP32953)
A4TKZ1 1.69e-70 210 77 0 127 3 grcA Autonomous glycyl radical cofactor Yersinia pestis (strain Pestoides F)
Q1CKF7 1.69e-70 210 77 0 127 3 grcA Autonomous glycyl radical cofactor Yersinia pestis bv. Antiqua (strain Nepal516)
A9R3Y7 1.69e-70 210 77 0 127 3 grcA Autonomous glycyl radical cofactor Yersinia pestis bv. Antiqua (strain Angola)
Q8ZD84 1.69e-70 210 77 0 127 3 grcA Autonomous glycyl radical cofactor Yersinia pestis
B2KA62 1.69e-70 210 77 0 127 3 grcA Autonomous glycyl radical cofactor Yersinia pseudotuberculosis serotype IB (strain PB1/+)
Q1C569 1.69e-70 210 77 0 127 3 grcA Autonomous glycyl radical cofactor Yersinia pestis bv. Antiqua (strain Antiqua)
A7FFS5 1.69e-70 210 77 0 127 3 grcA Autonomous glycyl radical cofactor Yersinia pseudotuberculosis serotype O:1b (strain IP 31758)
Q6D209 2.86e-70 209 75 0 127 3 grcA Autonomous glycyl radical cofactor Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672)
A7MH19 4.11e-70 209 75 0 127 3 grcA Autonomous glycyl radical cofactor Cronobacter sakazakii (strain ATCC BAA-894)
C6DC10 6.45e-70 208 75 0 127 3 grcA Autonomous glycyl radical cofactor Pectobacterium carotovorum subsp. carotovorum (strain PC1)
Q83K21 7.12e-70 208 78 0 127 3 grcA Autonomous glycyl radical cofactor Shigella flexneri
Q32CU0 2.09e-69 207 77 0 127 3 grcA Autonomous glycyl radical cofactor Shigella dysenteriae serotype 1 (strain Sd197)
Q3YYT6 8.22e-69 206 77 0 127 3 grcA Autonomous glycyl radical cofactor Shigella sonnei (strain Ss046)
Q31XQ5 8.22e-69 206 77 0 127 3 grcA Autonomous glycyl radical cofactor Shigella boydii serotype 4 (strain Sb227)
B2TYK2 8.22e-69 206 77 0 127 3 grcA Autonomous glycyl radical cofactor Shigella boydii serotype 18 (strain CDC 3083-94 / BS512)
B6I5F4 8.22e-69 206 77 0 127 3 grcA Autonomous glycyl radical cofactor Escherichia coli (strain SE11)
P68066 8.22e-69 206 77 0 127 1 grcA Autonomous glycyl radical cofactor Escherichia coli (strain K12)
B1IVP8 8.22e-69 206 77 0 127 3 grcA Autonomous glycyl radical cofactor Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks)
A8A391 8.22e-69 206 77 0 127 3 grcA Autonomous glycyl radical cofactor Escherichia coli O9:H4 (strain HS)
B1XBQ6 8.22e-69 206 77 0 127 3 grcA Autonomous glycyl radical cofactor Escherichia coli (strain K12 / DH10B)
C4ZYK2 8.22e-69 206 77 0 127 3 grcA Autonomous glycyl radical cofactor Escherichia coli (strain K12 / MC4100 / BW2952)
B7M8J4 8.22e-69 206 77 0 127 3 grcA Autonomous glycyl radical cofactor Escherichia coli O8 (strain IAI1)
B7MYL2 8.22e-69 206 77 0 127 3 grcA Autonomous glycyl radical cofactor Escherichia coli O81 (strain ED1a)
B5Z153 8.22e-69 206 77 0 127 3 grcA Autonomous glycyl radical cofactor Escherichia coli O157:H7 (strain EC4115 / EHEC)
P68067 8.22e-69 206 77 0 127 3 grcA Autonomous glycyl radical cofactor Escherichia coli O157:H7
B7LDH2 8.22e-69 206 77 0 127 3 grcA Autonomous glycyl radical cofactor Escherichia coli (strain 55989 / EAEC)
A7ZQ24 8.22e-69 206 77 0 127 3 grcA Autonomous glycyl radical cofactor Escherichia coli O139:H28 (strain E24377A / ETEC)
Q7CQ05 1.23e-68 205 76 0 127 3 grcA Autonomous glycyl radical cofactor Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q8XFE0 1.23e-68 205 76 0 127 3 grcA Autonomous glycyl radical cofactor Salmonella typhi
B4TS28 1.23e-68 205 76 0 127 3 grcA Autonomous glycyl radical cofactor Salmonella schwarzengrund (strain CVM19633)
B5BAR8 1.23e-68 205 76 0 127 3 grcA Autonomous glycyl radical cofactor Salmonella paratyphi A (strain AKU_12601)
C0PVZ1 1.23e-68 205 76 0 127 3 grcA Autonomous glycyl radical cofactor Salmonella paratyphi C (strain RKS4594)
A9N0W4 1.23e-68 205 76 0 127 3 grcA Autonomous glycyl radical cofactor Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
Q5PLH7 1.23e-68 205 76 0 127 3 grcA Autonomous glycyl radical cofactor Salmonella paratyphi A (strain ATCC 9150 / SARB42)
B4T289 1.23e-68 205 76 0 127 3 grcA Autonomous glycyl radical cofactor Salmonella newport (strain SL254)
B4TE27 1.23e-68 205 76 0 127 3 grcA Autonomous glycyl radical cofactor Salmonella heidelberg (strain SL476)
B5RD61 1.23e-68 205 76 0 127 3 grcA Autonomous glycyl radical cofactor Salmonella gallinarum (strain 287/91 / NCTC 13346)
B5QTW0 1.23e-68 205 76 0 127 3 grcA Autonomous glycyl radical cofactor Salmonella enteritidis PT4 (strain P125109)
Q57L55 1.23e-68 205 76 0 127 3 grcA Autonomous glycyl radical cofactor Salmonella choleraesuis (strain SC-B67)
A9MGW0 1.23e-68 205 76 0 127 3 grcA Autonomous glycyl radical cofactor Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980)
B5F227 1.23e-68 205 76 0 127 3 grcA Autonomous glycyl radical cofactor Salmonella agona (strain SL483)
B5FRD8 2.46e-68 204 76 0 127 3 grcA Autonomous glycyl radical cofactor Salmonella dublin (strain CT_02021853)
B7LUY6 3e-68 204 77 0 127 3 grcA Autonomous glycyl radical cofactor Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CCUG 18766 / IAM 14443 / JCM 21226 / LMG 7866 / NBRC 102419 / NCTC 12128 / CDC 0568-73)
B1LP92 3e-68 204 77 0 127 3 grcA Autonomous glycyl radical cofactor Escherichia coli (strain SMS-3-5 / SECEC)
B7N6H0 3e-68 204 77 0 127 3 grcA Autonomous glycyl radical cofactor Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC)
Q8FF10 3e-68 204 77 0 127 3 grcA Autonomous glycyl radical cofactor Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q0TEQ9 3e-68 204 77 0 127 3 grcA Autonomous glycyl radical cofactor Escherichia coli O6:K15:H31 (strain 536 / UPEC)
A1AEA9 3e-68 204 77 0 127 3 grcA Autonomous glycyl radical cofactor Escherichia coli O1:K1 / APEC
B7NRN5 3e-68 204 77 0 127 3 grcA Autonomous glycyl radical cofactor Escherichia coli O7:K1 (strain IAI39 / ExPEC)
B7MIR4 3e-68 204 77 0 127 3 grcA Autonomous glycyl radical cofactor Escherichia coli O45:K1 (strain S88 / ExPEC)
B7UH18 3e-68 204 77 0 127 3 grcA Autonomous glycyl radical cofactor Escherichia coli O127:H6 (strain E2348/69 / EPEC)
Q0T1S7 3.53e-68 204 77 0 127 3 grcA Autonomous glycyl radical cofactor Shigella flexneri serotype 5b (strain 8401)
A8AD08 3.94e-68 204 76 0 127 3 grcA Autonomous glycyl radical cofactor Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)
A4WDE8 4.8e-68 204 75 0 127 3 grcA Autonomous glycyl radical cofactor Enterobacter sp. (strain 638)
A6TCJ1 2.33e-67 202 75 0 127 3 grcA Autonomous glycyl radical cofactor Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
B5XNF9 2.33e-67 202 75 0 127 3 grcA Autonomous glycyl radical cofactor Klebsiella pneumoniae (strain 342)
B4F057 2.75e-67 202 75 0 127 3 grcA Autonomous glycyl radical cofactor Proteus mirabilis (strain HI4320)
C5BAK4 3.74e-67 201 75 0 127 3 grcA Autonomous glycyl radical cofactor Edwardsiella ictaluri (strain 93-146)
A6VLV5 1.25e-66 200 74 0 127 3 grcA Autonomous glycyl radical cofactor Actinobacillus succinogenes (strain ATCC 55618 / DSM 22257 / CCUG 43843 / 130Z)
A5UBC1 4.26e-65 196 72 0 127 3 grcA Autonomous glycyl radical cofactor Haemophilus influenzae (strain PittEE)
Q4QPM7 4.26e-65 196 72 0 127 3 grcA Autonomous glycyl radical cofactor Haemophilus influenzae (strain 86-028NP)
P44455 1.72e-64 194 71 0 127 1 grcA Autonomous glycyl radical cofactor Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
A5UFJ0 1.72e-64 194 71 0 127 3 grcA Autonomous glycyl radical cofactor Haemophilus influenzae (strain PittGG)
B0BTB3 1.7e-63 192 71 1 128 3 grcA Autonomous glycyl radical cofactor Actinobacillus pleuropneumoniae serotype 3 (strain JL03)
B3H0M3 1.7e-63 192 71 1 128 3 grcA Autonomous glycyl radical cofactor Actinobacillus pleuropneumoniae serotype 7 (strain AP76)
A3MZ79 1.7e-63 192 71 1 128 3 grcA Autonomous glycyl radical cofactor Actinobacillus pleuropneumoniae serotype 5b (strain L20)
Q9CPH6 4.08e-63 191 70 0 127 3 grcA Autonomous glycyl radical cofactor Pasteurella multocida (strain Pm70)
B8F6C4 4.71e-63 191 70 0 127 3 grcA Autonomous glycyl radical cofactor Glaesserella parasuis serovar 5 (strain SH0165)
Q65VN1 5.61e-63 191 70 0 127 3 grcA Autonomous glycyl radical cofactor Mannheimia succiniciproducens (strain KCTC 0769BP / MBEL55E)
B0UWA8 2.12e-62 189 69 0 127 3 grcA Autonomous glycyl radical cofactor Histophilus somni (strain 2336)
Q0I272 2.12e-62 189 69 0 127 3 grcA Autonomous glycyl radical cofactor Histophilus somni (strain 129Pt)
Q7VMC2 2.52e-62 189 70 1 128 3 grcA Autonomous glycyl radical cofactor Haemophilus ducreyi (strain 35000HP / ATCC 700724)
B2VED1 8.7e-62 188 70 0 127 3 grcA Autonomous glycyl radical cofactor Erwinia tasmaniensis (strain DSM 17950 / CFBP 7177 / CIP 109463 / NCPPB 4357 / Et1/99)
Q7MNR2 4.04e-59 181 69 1 127 3 grcA Autonomous glycyl radical cofactor Vibrio vulnificus (strain YJ016)
Q8DEP5 4.04e-59 181 69 1 127 3 grcA Autonomous glycyl radical cofactor Vibrio vulnificus (strain CMCP6)
Q87SC7 8.71e-59 180 67 1 127 3 grcA Autonomous glycyl radical cofactor Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
A7MS83 9.4e-59 180 67 1 127 3 grcA Autonomous glycyl radical cofactor Vibrio campbellii (strain ATCC BAA-1116)
C3LQD3 4.81e-58 178 69 1 127 3 grcA Autonomous glycyl radical cofactor Vibrio cholerae serotype O1 (strain M66-2)
Q9KPK6 4.81e-58 178 69 1 127 3 grcA Autonomous glycyl radical cofactor Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
A5F5R7 4.81e-58 178 69 1 127 3 grcA Autonomous glycyl radical cofactor Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)
Q6LUP6 6.91e-58 178 66 1 127 3 grcA Autonomous glycyl radical cofactor Photobacterium profundum (strain SS9)
B7VJ50 1.03e-57 177 67 1 127 3 grcA Autonomous glycyl radical cofactor Vibrio atlanticus (strain LGP32)
A1SUE3 5.31e-57 176 66 2 127 3 grcA Autonomous glycyl radical cofactor Psychromonas ingrahamii (strain DSM 17664 / CCUG 51855 / 37)
B6EKY5 7.88e-57 175 65 1 127 3 grcA Autonomous glycyl radical cofactor Aliivibrio salmonicida (strain LFI1238)
B5FAJ9 3.95e-56 173 64 1 127 3 grcA Autonomous glycyl radical cofactor Aliivibrio fischeri (strain MJ11)
Q5E2Y6 3.95e-56 173 64 1 127 3 grcA Autonomous glycyl radical cofactor Aliivibrio fischeri (strain ATCC 700601 / ES114)
P13316 2.15e-42 139 70 1 100 3 grcA Autonomous glycyl radical cofactor Enterobacteria phage T4
P09373 4.48e-26 105 78 0 61 1 pflB Formate acetyltransferase 1 Escherichia coli (strain K12)
P42632 4.94e-26 104 78 0 61 1 tdcE PFL-like enzyme TdcE Escherichia coli (strain K12)
P43753 5.78e-26 104 80 0 61 3 pflB Formate acetyltransferase Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P37836 3.86e-21 87 74 0 55 2 PFL Formate acetyltransferase (Fragment) Chlamydomonas reinhardtii
Q5HKH9 1.94e-20 89 67 0 61 3 pflB Formate acetyltransferase Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)
Q8CTX6 1.96e-20 89 67 0 61 3 pflB Formate acetyltransferase Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200)
Q7A1W9 2.2e-20 88 70 0 58 3 pflB Formate acetyltransferase Staphylococcus aureus (strain MW2)
Q6GCQ0 2.2e-20 88 70 0 58 3 pflB Formate acetyltransferase Staphylococcus aureus (strain MSSA476)
Q6GK90 2.2e-20 88 70 0 58 3 pflB Formate acetyltransferase Staphylococcus aureus (strain MRSA252)
Q7A7X6 2.2e-20 88 70 0 58 1 pflB Formate acetyltransferase Staphylococcus aureus (strain N315)
Q99WZ7 2.2e-20 88 70 0 58 3 pflB Formate acetyltransferase Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q5HJF4 2.2e-20 88 70 0 58 1 pflB Formate acetyltransferase Staphylococcus aureus (strain COL)
Q2YV53 2.2e-20 88 70 0 58 3 pflB Formate acetyltransferase Staphylococcus aureus (strain bovine RF122 / ET3-1)
Q2G1D8 2.2e-20 88 70 0 58 3 pflB Formate acetyltransferase Staphylococcus aureus (strain NCTC 8325 / PS 47)
Q2FK44 2.2e-20 88 70 0 58 3 pflB Formate acetyltransferase Staphylococcus aureus (strain USA300)
Q46266 8.26e-19 84 63 0 60 3 pfl Formate acetyltransferase Clostridium pasteurianum
P75793 1.92e-12 65 50 0 56 3 ybiW Probable dehydratase YbiW Escherichia coli (strain K12)
E5Y378 9.39e-09 55 47 0 51 1 islA Isethionate sulfite-lyase Bilophila wadsworthia (strain 3_1_6)
Q312S2 9.57e-09 55 49 0 51 2 islA Isethionate sulfite-lyase Oleidesulfovibrio alaskensis (strain ATCC BAA-1058 / DSM 17464 / G20)
Q727N1 1.83e-08 54 47 0 51 1 iseG Isethionate sulfite-lyase Nitratidesulfovibrio vulgaris (strain ATCC 29579 / DSM 644 / CCUG 34227 / NCIMB 8303 / VKM B-1760 / Hildenborough)
E5Y7I4 1.71e-07 52 42 0 56 1 hpsG (2S)-3-sulfopropanediol sulfolyase Bilophila wadsworthia (strain 3_1_6)
Q18CP5 2.35e-07 51 45 0 55 3 hpdB 4-hydroxyphenylacetate decarboxylase glycyl radical subunit Clostridioides difficile (strain 630)
C9YHW1 2.39e-07 51 45 0 55 3 hpdB 4-hydroxyphenylacetate decarboxylase glycyl radical subunit Clostridioides difficile (strain R20291)
Q84F16 2.39e-07 51 45 0 55 1 hpdB 4-hydroxyphenylacetate decarboxylase glycyl radical subunit Clostridioides difficile
C9XIS5 2.39e-07 51 45 0 55 3 hpdB 4-hydroxyphenylacetate decarboxylase glycyl radical subunit Clostridioides difficile (strain CD196)
B8J0R1 2.57e-07 51 45 0 51 1 islA Isethionate sulfite-lyase Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949 / MB)
Q30W70 6.82e-07 50 43 0 55 1 cutC Choline trimethylamine-lyase Oleidesulfovibrio alaskensis (strain ATCC BAA-1058 / DSM 17464 / G20)
A0A031WDE4 1.65e-06 48 39 0 53 1 pflD Trans-4-hydroxy-L-proline dehydratase Clostridioides difficile
P32674 3.23e-06 48 42 0 52 3 pflD Probable dehydratase PflD Escherichia coli (strain K12)
A0A100YXA1 9.64e-06 47 38 0 54 1 AUL39_03420 Indoleacetate decarboxylase Tractidigestivibacter scatoligenes
Q38HX4 7.25e-05 44 40 0 55 1 csdB 4-hydroxyphenylacetate decarboxylase glycyl radical subunit Clostridium scatologenes
A0A318FL05 9.62e-05 43 37 0 51 1 hpfG (2S)-3-sulfopropanediol dehydratase Klebsiella oxytoca
O32799 0.000148 43 32 3 91 3 pfl Formate acetyltransferase Lactococcus lactis subsp. cremoris (strain MG1363)
O32797 0.000148 43 32 3 91 3 pfl Formate acetyltransferase Lactococcus lactis subsp. lactis (strain IL1403)
O87943 0.000546 42 37 0 51 1 bssA Benzylsuccinate synthase alpha subunit Thauera aromatica
Q59934 0.000656 41 36 1 55 3 pfl Formate acetyltransferase Streptococcus mutans serotype c (strain ATCC 700610 / UA159)

  • Number of RefSeq hits:

General

Source Morganella morganii S4
Locus tag NLDBIP_03395
Feature type CDS
Gene grcA
Product autonomous glycyl radical cofactor GrcA
Location 666148 - 666531 (strand: -1)
Length 384 (nucleotides) / 127 (amino acids)

Contig

Accession ZDB_519
Length 680340 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_567
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01228 Glycine radical

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3445 Coenzyme transport and metabolism (H) H Autonomous glycyl radical cofactor GrcA

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K06866 autonomous glycyl radical cofactor - -

Protein Sequence

MVTGIQITKSENAALVNSFWLLDDSKDEVRCICAKEQYADGDVVSRAALGPFEYREVNLQVQPTVRVEGGQHLNVNVLRRETLEDAVKHPEKYPQLTIRVSGYAVRFNSLTPEQQRDVIARTFTASL

Flanking regions ( +/- flanking 50bp)

CAAGTTAAATGACAATCAATAAATTGATAACGAATCACCCGGAGGTCATCATGGTTACTGGTATTCAAATTACTAAATCCGAAAACGCTGCACTGGTTAACTCTTTCTGGCTGCTGGATGACAGCAAAGACGAAGTACGCTGCATCTGTGCAAAAGAACAATATGCAGACGGTGATGTTGTTTCCCGTGCCGCATTAGGTCCTTTCGAGTACCGCGAAGTGAATTTACAGGTTCAGCCTACTGTCCGTGTTGAGGGTGGTCAGCACCTGAACGTGAACGTTCTGCGTCGTGAAACTCTGGAAGATGCTGTTAAACATCCGGAAAAATACCCGCAGTTAACTATCCGTGTTTCCGGTTATGCAGTGCGTTTCAACTCACTGACTCCTGAACAGCAGCGCGACGTTATTGCCCGTACTTTTACTGCCAGTCTGTAATCGTTCCGGCAACAGTCCTTGTTCCGAAAACCACGCTCCGGCGTGGTTTT