Homologs in group_75

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12 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_10865 FBDBKF_10865 71.8 Morganella morganii S1 speF ornithine decarboxylase SpeF
FBDBKF_18200 FBDBKF_18200 81.5 Morganella morganii S1 speF Arginine/lysine/ornithine decarboxylase
EHELCC_05360 EHELCC_05360 71.8 Morganella morganii S2 speF ornithine decarboxylase SpeF
EHELCC_18235 EHELCC_18235 81.5 Morganella morganii S2 speF Arginine/lysine/ornithine decarboxylase
NLDBIP_05680 NLDBIP_05680 71.8 Morganella morganii S4 speF ornithine decarboxylase SpeF
NLDBIP_18160 NLDBIP_18160 81.5 Morganella morganii S4 speF Arginine/lysine/ornithine decarboxylase
LHKJJB_02560 LHKJJB_02560 71.8 Morganella morganii S3 speF ornithine decarboxylase SpeF
LHKJJB_18355 LHKJJB_18355 81.5 Morganella morganii S3 speF Arginine/lysine/ornithine decarboxylase
HKOGLL_15940 HKOGLL_15940 71.8 Morganella morganii S5 speF ornithine decarboxylase SpeF
HKOGLL_18090 HKOGLL_18090 81.5 Morganella morganii S5 speF Arginine/lysine/ornithine decarboxylase
F4V73_RS11525 F4V73_RS11525 71.3 Morganella psychrotolerans speF ornithine decarboxylase SpeF
PMI_RS01480 PMI_RS01480 70.9 Proteus mirabilis HI4320 speF ornithine decarboxylase SpeF

Distribution of the homologs in the orthogroup group_75

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_75

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P24169 0.0 992 66 2 729 1 speF Inducible ornithine decarboxylase Escherichia coli (strain K12)
P21169 0.0 961 66 2 698 1 speC Constitutive ornithine decarboxylase Escherichia coli (strain K12)
P44317 0.0 954 63 2 701 3 speF Ornithine decarboxylase Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P43099 0.0 762 53 3 687 1 odcI Inducible ornithine decarboxylase Lactobacillus sp. (strain 30a)
Q9I2S7 2.12e-116 370 35 10 645 1 ldcA Lysine decarboxylase LdcA Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P28629 1.37e-107 347 31 11 664 1 adiA Biodegradative arginine decarboxylase Escherichia coli (strain K12)
P52095 1.56e-101 330 33 12 624 1 ldcC Constitutive lysine decarboxylase Escherichia coli (strain K12)
P0A9H3 2.11e-101 330 33 14 624 1 cadA Inducible lysine decarboxylase Escherichia coli (strain K12)
P0A9H4 2.11e-101 330 33 14 624 3 cadA Inducible lysine decarboxylase Escherichia coli O157:H7
P0A1Z0 2.65e-101 330 33 15 635 3 cadA Inducible lysine decarboxylase Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A1Z1 2.65e-101 330 33 15 635 3 cadA Inducible lysine decarboxylase Salmonella typhi
P05033 7.65e-101 329 33 14 617 3 None Lysine decarboxylase Hafnia alvei
Q9K9K5 8.99e-27 118 24 20 569 3 speA Arginine decarboxylase Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
P21885 9.35e-26 115 24 19 569 1 speA Arginine decarboxylase Bacillus subtilis (strain 168)
Q81MS2 2.02e-23 108 23 17 568 3 speA Arginine decarboxylase Bacillus anthracis
Q819L4 1.78e-21 101 24 19 566 3 speA Arginine decarboxylase Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711)
P37536 2.99e-10 67 24 12 306 3 yaaO Uncharacterized protein YaaO Bacillus subtilis (strain 168)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS01740
Feature type CDS
Gene speC
Product ornithine decarboxylase
Location 385315 - 387516 (strand: 1)
Length 2202 (nucleotides) / 733 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_75
Orthogroup size 13
N. genomes 7

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Genomic region

Domains

PF01276 Orn/Lys/Arg decarboxylase, major domain
PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain
PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1982 Amino acid transport and metabolism (E) E Arginine/lysine/ornithine decarboxylase

Protein Sequence

MKNKKFAVSSLCSTLLRTLLTDLTEISCEVVSLAECDFTDVALCLITTDDIENGQFRRIEQQGFGQPVFVIIGKGEAVITSVPQGITGVINLNEDDSGVYPQVLLQAAQAYSDGLPPPFFGRMMNYTAQNPVSFACPGHQGGAFFRRHPAGRQFADYFGDAVFRADLCNADTAMGDLLIHEGAACAAQQHAATVFNADKTYFVLNGTSSSNKVVLNALLTPGDLVLFDRNNHKSNHHGALIQAGATPVYLEAARNPYGLIGGIDARCFDEDYLRARIAEAAPGRETQARPFRLAVIQLGTYDGTVYNARQVVDSIGSLCDYILFDSAWVGYEQFIPMMQMCSPLLLELNEYDPGILVTQSVHKQMAGFSQASQIHKKDRHIKGQARYVSHKQMNNAFMMHASTSPFYPLFAALDVNAKIHAGEPGKRLWAECVRIGIEARKLLLRTCQFIRPFIPETVNGRPWADAETGVIATDRRFFNFIPGERWHGFDGYAEDQYFVDPCKLLLTTPGVDVCTGEYEAFGVPATILAYYLRENNIVAEKCDLNSILFLLTPAETTEKMQHLVRQIARFEQLLNADAPLETVLPSLCRTYPERYTGYTLRQLCQEMHDLFVRHNVKQRQKEMFRRTHFPAVRMSPKAAHTEFVRGNTERVAVADIAGRIAAEGALPYPPGVLCVVPGEVWEAPVQHYFLALEETGDRFPGFAPELQGAYSERDEQGRLRVYAYVINEKKENE

Flanking regions ( +/- flanking 50bp)

TTTTTTCCGCTGACACCCTGTGTCAGGGATCATTATCATGCCGGATCGCTATGAAAAATAAAAAATTCGCTGTCAGTTCTCTTTGCAGCACTCTCCTGCGCACGTTGCTCACTGACCTGACAGAGATATCCTGTGAGGTGGTTTCCCTTGCAGAGTGTGATTTTACCGATGTGGCGCTGTGCCTTATCACAACAGATGATATTGAAAACGGGCAGTTCCGGCGTATTGAACAGCAGGGGTTTGGTCAGCCGGTTTTTGTGATAATTGGCAAAGGCGAAGCGGTGATAACATCTGTACCGCAGGGGATTACCGGGGTTATTAATCTGAATGAGGATGATAGCGGCGTTTACCCGCAGGTGTTGCTACAGGCGGCACAGGCATACAGTGACGGGCTGCCGCCGCCGTTTTTCGGGCGTATGATGAATTATACCGCGCAAAATCCGGTTTCATTTGCTTGTCCGGGTCACCAGGGCGGGGCGTTCTTCCGCCGTCATCCCGCCGGGCGTCAGTTTGCGGACTACTTCGGTGATGCGGTTTTTCGTGCAGATTTATGCAATGCAGATACCGCGATGGGTGATTTACTTATTCATGAGGGGGCGGCCTGTGCGGCTCAGCAACATGCGGCAACAGTATTCAATGCCGACAAAACGTATTTTGTGCTTAACGGCACTTCTTCATCAAACAAAGTGGTACTCAATGCGCTGCTGACGCCCGGCGACCTGGTATTATTTGATCGTAATAATCATAAATCAAACCATCACGGCGCACTGATCCAGGCAGGAGCAACCCCGGTATATCTGGAGGCTGCCCGTAACCCGTACGGGTTAATCGGGGGGATCGATGCCCGCTGTTTTGATGAGGATTATCTGCGGGCGCGGATTGCAGAAGCCGCACCGGGGCGGGAAACACAGGCGCGTCCGTTTCGTCTGGCGGTTATTCAGCTTGGCACCTATGACGGCACGGTATATAACGCCCGTCAGGTAGTGGACAGCATTGGTTCCCTGTGTGATTACATTTTGTTTGACTCTGCCTGGGTGGGATATGAGCAGTTTATCCCGATGATGCAGATGTGCTCTCCGTTGCTATTGGAACTCAATGAATATGATCCGGGCATCCTGGTCACACAATCTGTTCATAAGCAGATGGCAGGGTTTTCCCAGGCATCACAAATCCATAAAAAAGATCGTCATATCAAGGGACAGGCGCGGTATGTCTCTCATAAACAGATGAATAACGCGTTTATGATGCATGCCTCCACCAGCCCGTTTTATCCCTTGTTTGCCGCGCTGGATGTGAATGCAAAAATACATGCGGGGGAGCCGGGGAAACGGCTGTGGGCGGAATGCGTAAGAATAGGGATTGAGGCACGTAAACTGTTGCTGCGCACCTGTCAGTTTATCCGTCCGTTTATCCCGGAAACGGTAAACGGACGCCCGTGGGCGGATGCTGAAACCGGGGTTATTGCCACAGACCGACGTTTTTTCAATTTTATCCCTGGTGAGCGCTGGCACGGCTTTGACGGGTATGCAGAAGATCAGTATTTTGTCGATCCCTGCAAACTGCTGCTGACCACACCGGGTGTGGATGTCTGCACGGGCGAATACGAGGCGTTTGGTGTGCCTGCAACAATACTGGCGTATTATTTGCGGGAAAATAATATTGTGGCGGAGAAATGCGACCTCAATTCCATTTTATTTTTGCTGACCCCGGCAGAAACAACAGAAAAAATGCAGCATCTGGTCAGGCAGATTGCCCGCTTTGAGCAATTACTGAATGCGGATGCCCCGCTGGAAACCGTGCTGCCATCACTCTGCCGCACATATCCGGAACGCTATACGGGATATACACTGCGGCAGTTATGTCAGGAAATGCATGATTTGTTTGTCCGGCACAATGTAAAGCAGCGGCAGAAAGAGATGTTCCGGCGCACGCATTTTCCGGCGGTGCGGATGTCACCGAAAGCGGCGCATACCGAATTTGTCCGTGGCAATACAGAGCGGGTGGCGGTGGCGGATATTGCCGGGCGCATCGCGGCGGAAGGGGCGCTGCCGTATCCGCCGGGTGTGTTATGTGTGGTGCCCGGCGAAGTATGGGAAGCACCTGTTCAGCACTATTTTCTGGCACTGGAAGAGACGGGCGATCGTTTCCCAGGCTTTGCCCCGGAATTACAGGGCGCTTATTCTGAGCGGGATGAACAGGGGCGTCTGCGCGTGTATGCGTATGTTATTAATGAAAAAAAGGAAAATGAATGATGACAGCAGAACAATTTCACCAGCGGATATGGGAAATTCTTGAAGAGTTA