Homologs in group_6

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21 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_20025 FBDBKF_20025 28.8 Morganella morganii S1 - fimbrial biogenesis usher protein
FBDBKF_20055 FBDBKF_20055 28.9 Morganella morganii S1 fimD Outer membrane usher protein FimD/PapC
EHELCC_03475 EHELCC_03475 28.9 Morganella morganii S2 fimD Outer membrane usher protein FimD/PapC
EHELCC_03505 EHELCC_03505 28.8 Morganella morganii S2 - fimbrial biogenesis usher protein
NLDBIP_03475 NLDBIP_03475 28.9 Morganella morganii S4 fimD Outer membrane usher protein FimD/PapC
NLDBIP_03505 NLDBIP_03505 28.8 Morganella morganii S4 - fimbrial biogenesis usher protein
LHKJJB_09305 LHKJJB_09305 28.9 Morganella morganii S3 fimD Outer membrane usher protein FimD/PapC
LHKJJB_09335 LHKJJB_09335 28.8 Morganella morganii S3 - fimbrial biogenesis usher protein
HKOGLL_09640 HKOGLL_09640 28.8 Morganella morganii S5 - fimbrial biogenesis usher protein
HKOGLL_09670 HKOGLL_09670 28.9 Morganella morganii S5 fimD Outer membrane usher protein FimD/PapC
F4V73_RS01045 F4V73_RS01045 29.3 Morganella psychrotolerans - fimbrial biogenesis usher protein
F4V73_RS01675 F4V73_RS01675 30.3 Morganella psychrotolerans fimD outer membrane usher protein FimD
F4V73_RS01860 F4V73_RS01860 25.8 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS06000 F4V73_RS06000 19.0 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS07390 F4V73_RS07390 24.5 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS08460 F4V73_RS08460 28.4 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS09375 F4V73_RS09375 29.8 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS10255 F4V73_RS10255 29.5 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS10900 F4V73_RS10900 29.9 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS12580 F4V73_RS12580 26.9 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS13320 F4V73_RS13320 25.3 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein

Distribution of the homologs in the orthogroup group_6

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_6

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P21647 0.0 750 46 5 797 3 mrkC Outer membrane usher protein MrkC Klebsiella pneumoniae
P33341 1.46e-133 420 31 17 832 2 yehB Outer membrane usher protein YehB Escherichia coli (strain K12)
P33129 2.31e-119 384 33 22 794 1 htrE Outer membrane usher protein HtrE Escherichia coli (strain K12)
P45997 3.01e-116 375 31 21 835 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P33397 6.83e-116 374 32 21 844 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P45998 2.31e-115 372 32 21 837 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P42915 3.76e-105 345 30 18 787 2 yraJ Outer membrane usher protein YraJ Escherichia coli (strain K12)
P46009 4.71e-103 340 29 19 809 3 focD Outer membrane usher protein FocD Escherichia coli
P37924 1.08e-102 340 30 21 795 3 fimD Outer membrane usher protein FimD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P33410 1.92e-100 333 30 22 811 3 fimC Outer membrane usher protein FimC Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
P77468 6.34e-99 329 30 18 782 2 sfmD Outer membrane usher protein SfmD Escherichia coli (strain K12)
P30130 7.61e-96 321 29 27 863 1 fimD Outer membrane usher protein FimD Escherichia coli (strain K12)
P75857 8.98e-96 321 30 17 758 2 elfC Probable outer membrane usher protein ElfC Escherichia coli (strain K12)
Q8XDD1 2.35e-93 314 30 17 758 2 elfC Probable outer membrane usher protein ElfC Escherichia coli O157:H7
P43662 3.14e-91 308 29 23 760 3 lpfC Outer membrane usher protein LpfC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P53517 2.23e-87 298 28 24 830 3 afaC Outer membrane usher protein AfaC Escherichia coli
P33388 1.08e-75 265 29 21 737 3 sefC Outer membrane usher protein SefC Salmonella enteritidis
P26949 4.51e-72 255 27 27 812 1 caf1A F1 capsule-anchoring protein Yersinia pestis
P33408 2.95e-69 248 27 16 744 3 myfC Outer membrane usher protein MyfC Yersinia enterocolitica
P46005 6.54e-69 247 27 21 775 3 aggC Outer membrane usher protein AggC Escherichia coli
Q56983 8.31e-67 241 26 19 779 3 psaC Outer membrane usher protein PsaC Yersinia pseudotuberculosis serotype I (strain IP32953)
P31527 8.31e-67 241 26 19 779 3 psaC Outer membrane usher protein PsaC Yersinia pestis
P07110 6.86e-60 221 28 26 797 1 papC Outer membrane usher protein PapC Escherichia coli
P53514 5.29e-58 216 26 33 853 3 pmfC Outer membrane usher protein PmfC Proteus mirabilis (strain HI4320)
P46000 1.13e-57 215 29 21 669 3 fasD Outer membrane usher protein FasD Escherichia coli
P76655 8.41e-57 212 26 27 806 5 yqiG Putative outer membrane usher protein YqiG Escherichia coli (strain K12)
P53512 2.94e-55 207 26 25 777 3 cssD Outer membrane usher protein CssD Escherichia coli
P53513 6.37e-53 201 25 24 776 3 cssD Outer membrane usher protein CssD Escherichia coli
P15484 4.93e-52 199 27 16 624 3 None Outer membrane usher protein CS3-2 Escherichia coli
P77196 3.08e-50 193 26 31 818 5 yfcU Putative outer membrane usher protein YfcU Escherichia coli (strain K12)
Q8X5K8 2.13e-43 167 27 15 480 2 lpfC' Probable outer membrane usher protein LpfC' Escherichia coli O157:H7
Q8X5K7 4.1e-40 155 32 9 331 2 lpfC Probable outer membrane usher protein LpfC Escherichia coli O157:H7
P12050 4.22e-38 156 24 28 782 3 fanD Outer membrane usher protein FanD Escherichia coli
P75750 7.32e-38 155 23 27 783 3 ybgQ Uncharacterized outer membrane usher protein YbgQ Escherichia coli (strain K12)
P45420 6.52e-35 146 23 19 633 3 yhcD Uncharacterized outer membrane usher protein YhcD Escherichia coli (strain K12)
P37868 1.47e-34 145 23 27 817 3 pefC Outer membrane usher protein PefC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P06970 8e-33 139 23 28 824 3 faeD Outer membrane usher protein FaeD Escherichia coli
Q7DBJ9 3.41e-22 103 26 7 289 4 ydeT Fimbrial usher domain-containing protein YdeT Escherichia coli O157:H7
P76137 3.46e-21 100 25 10 351 4 ydeT Fimbrial usher domain-containing protein YdeT Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS00860
Feature type CDS
Gene -
Product fimbria/pilus outer membrane usher protein
Location 179395 - 181806 (strand: -1)
Length 2412 (nucleotides) / 803 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_6
Orthogroup size 22
N. genomes 6

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Genomic region

Domains

PF00577 Outer membrane usher protein
PF13953 PapC C-terminal domain
PF13954 PapC N-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3188 Cell motility (N)
Extracellular structures (W)		 NW Outer membrane usher protein FimD/PapC

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K07347 outer membrane usher protein Two-component system
Pertussis		 -

Protein Sequence

MLVSSAAWCEENTDYEFESGFIVGSKENADLSRFSVSAVSEGTYSLDVYTNDKWQGRHDLQVKEIAKDRLGICYSEKMLYAFGINAEKLNSGAAPDENTCLPLNEWNNSPQVIDSLKASTLQLFITIPQVYLLNTGRYISADNWDHGITALNVSYMANYYHSRQTDYGSNDDDTFYLTTNSGLSFKGWLLKQEGNYSWQRNGRKGWKSNQTYLQRPVAAINSKFTAGQFATEGDILESVRLRGLKLTTDGNMYPDGTTNFAPFIRGIAQSNALVTVRQVGLVIYQTSVPAGPFELTDINPSGYGNDLEVTIKEADGSESTFSVPYTSSNKLVRPGFFRYDINAGKADYDGLNYHPNMMQGSLQYGLNNFLTLYSGANISEDYYAWLAGTGLNTPVGTFSLDATHARTEFKHNTAQGENYQFSFTQIYPGTNTNLYLSYYRRSGRDYYAVNDALYSINAERHNDFTGNYREKQGFIYSVNQSFAENFGSLYLTGRISDYWDSDRQDKQYQFSYNNSFDKLSYSLGFMRTYSDDREKGYNDSINLNLNYPLSFGDGYRATMTSNTWIDNKRFGSSQIGVNGSLDAGNTLTYGVSTAVMKDNNYAASVNGGYRNAVSNLNANYSYGRKYRQFGMGASGSVVAHSGGITFTPEISGTMVLAEAENAQGASLLGFPASRFDKSGYVLMPYVRPYRVNTIEIDPKGSSEDIAFQNTSANIAPYEGAIVKVKFGTKIEKNIMYIVRRTDGRPLPFGTEVTDLKGNAIGVVSQGSVVLINDENATQGVVRLENETCTFPLDLSKRQNTLCQ

Flanking regions ( +/- flanking 50bp)

GTATAAAAACCATAATAATCGATTACTTTATAAAATCGTCGGCTGGAATTTTGCTTGTCTCTTCTGCCGCCTGGTGTGAAGAAAATACAGATTATGAGTTTGAGAGCGGATTTATTGTCGGCTCAAAAGAGAACGCTGACCTTAGCCGGTTCAGCGTTTCTGCTGTTTCCGAAGGAACCTATTCTCTTGATGTTTACACCAATGATAAATGGCAGGGTCGCCATGATTTACAGGTGAAAGAAATAGCAAAAGACCGTCTTGGTATCTGTTATTCAGAAAAAATGCTTTACGCCTTCGGGATTAATGCAGAAAAACTGAATTCCGGCGCTGCCCCGGATGAAAACACCTGTCTGCCACTTAATGAATGGAATAATTCCCCGCAGGTCATTGATAGTTTAAAAGCCAGCACGCTGCAATTATTTATTACTATTCCGCAAGTTTATCTGCTCAATACCGGTCGTTATATCTCTGCGGACAACTGGGATCACGGTATTACGGCACTCAATGTCTCCTATATGGCTAATTATTATCACAGCAGGCAGACAGATTACGGCAGCAATGATGATGATACCTTTTATCTGACCACCAATAGCGGATTATCGTTTAAAGGCTGGTTACTGAAACAGGAAGGTAACTACAGTTGGCAGCGCAACGGAAGAAAAGGCTGGAAAAGCAATCAGACCTATTTACAGCGCCCGGTAGCGGCTATTAATTCTAAATTTACCGCCGGACAATTTGCCACCGAAGGGGATATTCTCGAAAGCGTGCGGTTACGCGGACTGAAATTAACCACCGACGGCAACATGTATCCTGACGGTACAACAAACTTTGCCCCGTTCATCCGCGGAATAGCACAGAGTAACGCTCTGGTGACGGTCCGCCAGGTCGGGCTTGTTATTTATCAGACCTCTGTCCCTGCCGGTCCGTTTGAATTAACCGATATTAATCCATCCGGTTATGGTAATGACCTGGAAGTCACCATCAAAGAAGCCGATGGCAGTGAAAGTACATTTTCTGTTCCTTATACGTCATCCAATAAATTAGTCCGGCCCGGTTTTTTTCGTTATGACATCAATGCCGGTAAAGCCGATTATGACGGATTAAATTATCACCCGAATATGATGCAGGGTTCGTTACAGTACGGGCTGAATAACTTCCTGACACTCTATTCCGGTGCCAATATCTCTGAAGATTACTATGCCTGGCTTGCCGGAACCGGTCTTAATACCCCTGTCGGGACTTTTTCACTCGATGCCACTCATGCGCGGACAGAATTTAAACACAACACCGCTCAGGGAGAAAACTATCAGTTTTCATTCACCCAGATTTATCCCGGCACAAATACCAACCTGTATTTATCGTATTACCGCCGATCCGGGCGGGATTATTACGCCGTCAATGATGCGCTATATAGTATTAATGCTGAAAGGCATAATGACTTTACCGGTAATTACCGCGAAAAACAGGGATTCATTTATTCTGTTAATCAATCTTTTGCTGAAAATTTCGGTAGTCTGTATCTGACCGGACGAATATCTGATTACTGGGACAGTGACCGGCAGGATAAACAATATCAGTTCAGTTATAACAACAGTTTTGACAAATTATCCTATTCCCTCGGTTTTATGCGCACCTATTCTGATGATCGCGAAAAAGGCTATAACGACAGTATTAACCTCAACCTGAACTATCCGCTGTCATTCGGGGACGGTTACCGGGCGACCATGACATCGAACACCTGGATTGATAATAAGCGGTTTGGCTCATCACAAATCGGGGTCAACGGCTCCCTGGATGCAGGAAACACACTGACTTATGGTGTCAGCACCGCGGTAATGAAGGACAATAATTATGCGGCATCCGTCAACGGAGGCTATCGTAATGCCGTTTCTAATCTTAATGCCAACTACAGCTACGGACGGAAATACCGTCAGTTCGGTATGGGGGCGAGCGGCTCAGTGGTGGCACACTCCGGCGGAATAACCTTCACTCCTGAAATTTCCGGCACTATGGTTCTGGCTGAAGCTGAAAATGCACAGGGCGCATCATTACTGGGGTTTCCTGCCAGCCGGTTTGATAAGAGTGGCTATGTTCTGATGCCGTATGTCAGACCATACCGCGTCAATACCATTGAAATCGATCCGAAAGGCAGCTCTGAAGATATCGCATTCCAGAATACCTCTGCCAATATTGCCCCTTATGAGGGAGCGATTGTTAAAGTAAAATTCGGCACAAAAATCGAAAAAAACATCATGTATATTGTCCGGCGAACAGACGGACGACCGCTTCCTTTCGGTACAGAAGTGACTGATCTGAAAGGAAACGCGATTGGCGTGGTATCACAGGGAAGTGTGGTTCTCATCAATGATGAAAACGCAACACAAGGGGTTGTCCGTCTGGAAAATGAAACCTGTACCTTCCCGCTGGATCTCAGCAAAAGGCAGAACACACTATGTCAATAAAACATCATAATATTCTCTACGCCGTACTGGCGCTTCTGTTTACCGGCAGC