PF20258


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF20258, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF20258
Description Aminomethyltransferase beta-barrel domain

Occurence in the database

PF20258 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1940 FBDBKF_14560 6315 7418 1 mnmA tRNA 2-thiouridine(34) synthase MnmA Morganella morganii S1
1 group_1940 EHELCC_15365 36391 37494 1 mnmA tRNA 2-thiouridine(34) synthase MnmA Morganella morganii S2
2 group_1940 NLDBIP_15895 36391 37494 1 mnmA tRNA 2-thiouridine(34) synthase MnmA Morganella morganii S4
3 group_1940 LHKJJB_15945 79192 80295 -1 mnmA tRNA 2-thiouridine(34) synthase MnmA Morganella morganii S3
4 group_1940 HKOGLL_15065 78404 79507 -1 mnmA tRNA 2-thiouridine(34) synthase MnmA Morganella morganii S5
5 group_1940 F4V73_RS07355 1534551 1535654 1 mnmA tRNA 2-thiouridine(34) synthase MnmA Morganella psychrotolerans
6 group_1940 PMI_RS04365 980553 981656 -1 mnmA tRNA 2-thiouridine(34) synthase MnmA Proteus mirabilis HI4320