Orthogroup:group_1977


Homologs in group_1977

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_14830 FBDBKF_14830 Morganella morganii S1 nfo deoxyribonuclease IV
EHELCC_15635 EHELCC_15635 Morganella morganii S2 nfo deoxyribonuclease IV
NLDBIP_16165 NLDBIP_16165 Morganella morganii S4 nfo deoxyribonuclease IV
LHKJJB_15675 LHKJJB_15675 Morganella morganii S3 nfo deoxyribonuclease IV
HKOGLL_14795 HKOGLL_14795 Morganella morganii S5 nfo deoxyribonuclease IV
F4V73_RS07630 F4V73_RS07630 Morganella psychrotolerans nfo deoxyribonuclease IV
PMI_RS04115 PMI_RS04115 Proteus mirabilis HI4320 nfo deoxyribonuclease IV

Distribution of group_1977 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1977 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1977

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1977.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 nfo 7

Product

# Product Occurence
1 deoxyribonuclease IV 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0648 7 L Replication, recombination and repair (L) Endonuclease IV

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K01151 7 deoxyribonuclease IV [EC:3.1.21.2] Base excision repair -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF01261 7 Xylose isomerase-like TIM barrel

Annotations of the 280 SwissProt hits

Annotation Number of occurrences
Apurinic-apyrimidinic endonuclease 1
Apurinic-apyrimidinic endonuclease 1 4
Endonuclease 4 2
Endonuclease 4 homolog 1
Probable AP endonuclease 5
Probable endonuclease 4 263
Probable endonuclease 4 (Fragment) 2
Putative endonuclease 4 1
Uncharacterized protein MJ0133 1

Protein length

Min length 280
Max length 281
Mean length (sd) 280.1 (0.4)
Median length 280.0

Protein length distribution