PF18693


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF18693, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF18693
Description TRAM domain

Occurence in the database

PF18693 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_892 FBDBKF_04660 130950 132290 -1 rimO 30S ribosomal protein S12 methylthiotransferase RimO Morganella morganii S1
1 group_892 EHELCC_05950 190407 191747 -1 rimO 30S ribosomal protein S12 methylthiotransferase RimO Morganella morganii S2
2 group_892 NLDBIP_06270 231472 232812 -1 rimO 30S ribosomal protein S12 methylthiotransferase RimO Morganella morganii S4
3 group_892 LHKJJB_03150 208996 210336 -1 rimO 30S ribosomal protein S12 methylthiotransferase RimO Morganella morganii S3
4 group_892 HKOGLL_06625 130860 132200 -1 rimO 30S ribosomal protein S12 methylthiotransferase RimO Morganella morganii S5
5 group_892 F4V73_RS09110 1904705 1906045 -1 rimO 30S ribosomal protein S12 methylthiotransferase RimO Morganella psychrotolerans
6 group_892 PMI_RS15730 3495155 3496486 -1 rimO 30S ribosomal protein S12 methylthiotransferase RimO Proteus mirabilis HI4320