PF13740


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF13740, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF13740
Description ACT domain

Occurence in the database

PF13740 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1835 FBDBKF_13605 99152 99694 1 gcvR Glycine cleavage system regulator GcvR Morganella morganii S1
1 group_1835 EHELCC_08490 175497 176039 -1 gcvR Glycine cleavage system regulator GcvR Morganella morganii S2
2 group_1835 NLDBIP_08815 175497 176039 -1 gcvR Glycine cleavage system regulator GcvR Morganella morganii S4
3 group_1835 LHKJJB_05450 81120 81662 1 gcvR Glycine cleavage system regulator GcvR Morganella morganii S3
4 group_1835 HKOGLL_05465 160088 160630 -1 gcvR Glycine cleavage system regulator GcvR Morganella morganii S5
5 group_1835 F4V73_RS03160 674358 674900 -1 ACT domain-containing protein Morganella psychrotolerans
6 group_1835 PMI_RS07625 1663243 1663800 1 glycine cleavage system transcriptional repressor Proteus mirabilis HI4320