PF13683

Help to interpret the results

Three outputs have been generated:
General: this tab contains the description, occurence in the database and other information related to the selected Pfam domain PF13683
Protein list: lists the 13 occurences of the Pfam domain within the database. The table reports information on each occurence.
Profile: phylogenetic tree annotated with
- the presence of the Pfam domain of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domain has been clustered.
Orthogroups are shown in red if they are annotated with that particular Pfam domain in a given genome , in green otherwise, i.e. if there is a discrepency between orthogroup clustering and Pfam domain prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domain.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domain prediction.

Description

External link PF13683
Description Integrase core domain

Occurence in the database

PF13683 is associated with 13 different proteins
The 13 proteins are classified into 2 different orthogroup(s)
Orthogroup Locus Start Stop S. Gene Product Organism
0 group_64 FBDBKF_08900 162322 163026 -1 Integrase catalytic domain-containing protein Morganella morganii S1
1 group_64 FBDBKF_16590 329 1084 -1 IS3 family transposase Morganella morganii S1
2 group_3512 FBDBKF_17945 26574 26780 1 Integrase catalytic domain-containing protein Morganella morganii S1
3 group_3512 EHELCC_06390 9596 9802 -1 Integrase catalytic domain-containing protein Morganella morganii S2
4 group_64 EHELCC_12625 699 1403 1 Integrase catalytic domain-containing protein Morganella morganii S2
5 group_3512 NLDBIP_06710 9469 9675 -1 Integrase catalytic domain-containing protein Morganella morganii S4
6 group_64 NLDBIP_12965 699 1403 1 Integrase catalytic domain-containing protein Morganella morganii S4
7 group_64 LHKJJB_13590 161040 161744 -1 Integrase catalytic domain-containing protein Morganella morganii S3
8 group_3512 LHKJJB_19310 9380 9586 -1 Integrase catalytic domain-containing protein Morganella morganii S3
9 group_3512 HKOGLL_04680 259966 260172 1 Integrase catalytic domain-containing protein Morganella morganii S5
10 group_64 HKOGLL_11440 699 1403 1 Integrase catalytic domain-containing protein Morganella morganii S5
11 group_64 F4V73_RS01605 356068 356320 -1 IS3 family transposase Morganella psychrotolerans
12 group_64 PMI_RS15560 3462173 3463177 1 IS481 family transposase Proteus mirabilis HI4320