PF13683


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF13683, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 13 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF13683
Description Integrase core domain

Occurence in the database

PF13683 is associated with 13 different proteins (see tab "Protein list" and "Profile")
The 13 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_308 FBDBKF_08900 162322 163026 -1 Integrase catalytic domain-containing protein Morganella morganii S1
1 group_308 FBDBKF_16590 329 1084 -1 IS3 family transposase Morganella morganii S1
2 group_3508 FBDBKF_17945 26574 26780 1 Integrase catalytic domain-containing protein Morganella morganii S1
3 group_3508 EHELCC_06390 9596 9802 -1 Integrase catalytic domain-containing protein Morganella morganii S2
4 group_308 EHELCC_12625 699 1403 1 Integrase catalytic domain-containing protein Morganella morganii S2
5 group_3508 NLDBIP_06710 9469 9675 -1 Integrase catalytic domain-containing protein Morganella morganii S4
6 group_308 NLDBIP_12965 699 1403 1 Integrase catalytic domain-containing protein Morganella morganii S4
7 group_308 LHKJJB_13590 161040 161744 -1 Integrase catalytic domain-containing protein Morganella morganii S3
8 group_3508 LHKJJB_19310 9380 9586 -1 Integrase catalytic domain-containing protein Morganella morganii S3
9 group_3508 HKOGLL_04680 259966 260172 1 Integrase catalytic domain-containing protein Morganella morganii S5
10 group_308 HKOGLL_11440 699 1403 1 Integrase catalytic domain-containing protein Morganella morganii S5
11 group_308 F4V73_RS01605 356068 356320 -1 IS3 family transposase Morganella psychrotolerans
12 group_308 PMI_RS15560 3462173 3463177 1 IS481 family transposase Proteus mirabilis HI4320