PF13460


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF13460, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 9 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF13460
Description NAD(P)H-binding

Occurence in the database

PF13460 is associated with 9 different proteins (see tab "Protein list" and "Profile")
The 9 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_290 FBDBKF_07025 68175 69623 -1 ybjT DUF2867 domain-containing protein Morganella morganii S1
1 group_290 EHELCC_03945 116563 118011 1 ybjT DUF2867 domain-containing protein Morganella morganii S2
2 group_290 NLDBIP_03945 116359 117807 1 ybjT DUF2867 domain-containing protein Morganella morganii S4
3 group_290 LHKJJB_09775 116473 117921 1 ybjT DUF2867 domain-containing protein Morganella morganii S3
4 group_290 HKOGLL_09200 73131 74579 -1 ybjT DUF2867 domain-containing protein Morganella morganii S5
5 group_290 F4V73_RS01215 255753 257201 -1 DUF2867 domain-containing protein Morganella psychrotolerans
6 group_290 PMI_RS03360 740546 742009 -1 DUF2867 domain-containing protein Proteus mirabilis HI4320
7 group_404 PMI_RS05600 1221697 1222560 1 SDR family oxidoreductase Proteus mirabilis HI4320
8 group_290 PMI_RS12560 2784650 2785288 1 NAD(P)H-binding protein Proteus mirabilis HI4320