Homologs in group_404

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_16315 FBDBKF_16315 24.7 Morganella morganii S1 rfaD ADP-glyceromanno-heptose 6-epimerase
EHELCC_16350 EHELCC_16350 24.7 Morganella morganii S2 rfaD ADP-glyceromanno-heptose 6-epimerase
NLDBIP_16990 NLDBIP_16990 24.7 Morganella morganii S4 rfaD ADP-glyceromanno-heptose 6-epimerase
LHKJJB_16910 LHKJJB_16910 24.7 Morganella morganii S3 rfaD ADP-glyceromanno-heptose 6-epimerase
HKOGLL_16930 HKOGLL_16930 24.7 Morganella morganii S5 rfaD ADP-glyceromanno-heptose 6-epimerase
F4V73_RS17275 F4V73_RS17275 25.5 Morganella psychrotolerans rfaD ADP-glyceromanno-heptose 6-epimerase
PMI_RS15705 PMI_RS15705 24.7 Proteus mirabilis HI4320 rfaD ADP-glyceromanno-heptose 6-epimerase

Distribution of the homologs in the orthogroup group_404

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_404

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
J9RYI6 7.12e-15 77 30 11 227 1 DVR Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic Cucumis sativus
Q1H537 5.06e-14 75 29 10 224 1 DVR Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic Arabidopsis thaliana
P49534 6.31e-14 73 24 4 236 3 ycf39 Photosystem II assembly factor Ycf39 Trieres chinensis
P74429 1.58e-13 73 25 7 247 1 ycf39 Photosystem II assembly factor Ycf39 Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
O78472 7.03e-13 70 26 3 192 3 ycf39 Photosystem II assembly factor Ycf39 Guillardia theta
Q10LH0 1.41e-12 70 26 10 264 3 DVR Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic Oryza sativa subsp. japonica
D5L1S4 1.41e-12 70 26 10 264 1 DVR Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic Oryza sativa subsp. indica
B6SZW0 2.99e-12 69 26 11 264 1 DVR Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic Zea mays
Q1XDP9 1e-11 67 24 6 242 3 ycf39 Photosystem II assembly factor Ycf39 Neopyropia yezoensis
P48279 1.03e-11 67 25 4 230 3 ycf39 Photosystem II assembly factor Ycf39 Cyanophora paradoxa
P75822 1.35e-11 68 23 8 261 3 ybjT Putative NAD(P)-binding protein YbjT Escherichia coli (strain K12)
O19883 2.14e-11 66 28 12 272 3 ycf39 Photosystem II assembly factor Ycf39 Cyanidium caldarium
P25284 1.28e-10 64 22 4 237 1 nuo40 NADH-ubiquinone oxidoreductase 40 kDa subunit, mitochondrial Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
P51238 1.36e-09 61 22 5 241 3 ycf39 Photosystem II assembly factor Ycf39 Porphyra purpurea
Q8SKU2 5.93e-08 57 28 5 172 1 TIC62 Protein TIC 62, chloroplastic Pisum sativum
A0A0H3C8X7 1.46e-07 55 25 8 238 1 cerR Ceramide reductase Caulobacter vibrioides (strain NA1000 / CB15N)
B7UEU8 2.89e-07 54 25 12 256 2 A622 Isoflavone reductase homolog A622 Nicotiana glauca
P52579 3.81e-07 53 25 11 251 2 A622 Isoflavone reductase homolog A622 Nicotiana tabacum
Q76LW3 3.81e-07 53 25 11 251 2 A622 Isoflavone reductase homolog A622 Nicotiana sylvestris
Q8H124 8.98e-07 52 28 7 169 1 At2g34460 Uncharacterized protein At2g34460, chloroplastic Arabidopsis thaliana
Q8H0U5 9.77e-07 53 27 6 172 1 TIC62 Protein TIC 62, chloroplastic Arabidopsis thaliana
O65502 1.4e-06 52 22 9 250 1 HCF244 Protein HIGH CHLOROPHYLL FLUORESCENCE PHENOTYPE 244, chloroplastic Arabidopsis thaliana
Q56623 2.62e-06 51 26 13 266 3 galE UDP-glucose 4-epimerase Vibrio cholerae
Q10A77 2.65e-06 52 28 8 175 1 TIC62 Protein TIC 62, chloroplastic Oryza sativa subsp. japonica
B6VRE6 7.14e-06 50 24 10 253 2 A622L Isoflavone reductase homolog A622-like Nicotiana tabacum
D5JWB3 1.84e-05 48 35 2 78 1 SARED1 Sanguinarine reductase Eschscholzia californica
P9WQP7 2.49e-05 48 25 2 119 1 Rv1106c 3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WQP6 2.49e-05 48 25 2 119 3 MT1137 3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
B9HRL7 2.69e-05 48 25 9 259 1 PCBER Phenylcoumaran benzylic ether reductase POP1 Populus trichocarpa
Q9LL41 3.53e-05 48 24 10 253 1 PCBER Phenylcoumaran benzylic ether reductase PT1 Pinus taeda
P52577 4.75e-05 47 25 11 253 2 At1g75280 Isoflavone reductase homolog P3 Arabidopsis thaliana
O07609 6.38e-05 46 26 9 207 2 yhfK Uncharacterized sugar epimerase YhfK Bacillus subtilis (strain 168)
Q8KU07 0.000108 46 21 3 207 1 azoB NAD(P)H azoreductase Xenophilus azovorans
O35469 0.000209 45 25 7 191 1 Hsd3b6 3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase type 6 Mus musculus
Q94EG6 0.000282 45 22 4 184 1 At5g02240 Uncharacterized protein At5g02240 Arabidopsis thaliana
P22072 0.000294 45 27 6 174 2 Hsd3b 3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase type 2 Rattus norvegicus
Q8X7P7 0.000352 45 23 10 272 1 gnu N-acetyl-alpha-D-glucosaminyl-diphospho-ditrans,octacis-undecaprenol 4-epimerase Escherichia coli O157:H7
Q9SK66 0.000365 45 20 6 262 1 At2g20360 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial Arabidopsis thaliana
O81355 0.000374 45 24 9 254 1 PYRC5 Phenylcoumaran benzylic ether reductase Pyrc5 Pyrus communis
O80934 0.000619 44 22 6 213 1 At2g37660 Uncharacterized protein At2g37660, chloroplastic Arabidopsis thaliana
Q15GI3 0.000644 44 24 7 205 1 IGS1 Isoeugenol synthase 1 Petunia hybrida

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS05600
Feature type CDS
Gene -
Product SDR family oxidoreductase
Location 1221697 - 1222560 (strand: 1)
Length 864 (nucleotides) / 287 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_404
Orthogroup size 8
N. genomes 7

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Genomic region

Domains

PF13460 NAD(P)H-binding

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0702 General function prediction only (R) R Uncharacterized conserved protein YbjT, contains NAD(P)-binding and DUF2867 domains

Protein Sequence

MKRILVAGATGYLGGFLIQELKKQGYWVRVLVRNHQQATKFADVDDIFIGEITKPEQLSLIAQNIDCVISTVGITRQKEGLTYMDVDYQANANLLEEAIKSKVNKFIYISAIDGETHRNLKIFQAKERFVDKLKQANLAYCIVRPNGYFSDMGDFLQMAASGKVYLFGDGEQKINPISGKDLAQFIVEKMTTNINEFTVGGPDILSLNQICELAGSALDKKIKIIHLPDTLRKITIFTLRHFTSQKFYGPLEFFLTFMANSHIGMCYGHDHLSNYYIELADPTYKRK

Flanking regions ( +/- flanking 50bp)

TTTATCATTGATGTTACTTTTCATGATAATTAAAAAAGAAAGGAGTTGAAATGAAACGGATATTAGTCGCGGGAGCAACAGGATATTTGGGTGGTTTTTTAATTCAAGAATTAAAAAAACAAGGATATTGGGTACGTGTTTTAGTTAGAAATCATCAACAAGCGACAAAGTTTGCGGATGTTGATGACATATTCATCGGCGAGATCACAAAACCAGAGCAACTTTCTTTGATTGCTCAAAATATTGATTGCGTGATATCAACGGTAGGGATCACTCGGCAAAAAGAAGGGTTAACCTATATGGATGTGGATTATCAGGCAAATGCCAATTTATTAGAAGAAGCGATTAAATCGAAGGTTAATAAATTTATTTATATCTCGGCTATTGATGGCGAAACACACCGAAATCTAAAGATTTTTCAAGCAAAGGAGCGCTTTGTTGATAAATTAAAACAAGCCAATTTAGCATACTGTATTGTAAGACCTAATGGTTATTTTAGCGATATGGGGGATTTTTTACAGATGGCAGCATCGGGTAAAGTTTATTTATTTGGTGATGGCGAACAAAAAATAAATCCTATCTCTGGAAAAGATTTAGCGCAATTTATTGTCGAGAAAATGACAACCAATATAAATGAATTCACTGTAGGTGGACCGGATATTCTATCTTTGAATCAAATATGTGAACTCGCAGGAAGCGCATTAGATAAAAAAATTAAAATAATCCATTTACCCGATACGTTAAGAAAAATAACTATTTTTACGTTACGTCATTTTACGAGCCAAAAATTTTATGGGCCATTAGAGTTTTTTTTAACTTTTATGGCAAACAGTCATATTGGTATGTGTTATGGGCATGATCATTTATCAAATTATTATATTGAATTAGCTGATCCGACATATAAGAGAAAATAGTACCCGCATGTGCGGGTGCTAATAAAAAATTAGAGAGCAGCGATGATTTT