PF12802


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF12802, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 13 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF12802
Description MarR family

Occurence in the database

PF12802 is associated with 13 different proteins (see tab "Protein list" and "Profile")
The 13 proteins are classified into 3 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_758 FBDBKF_03390 79014 79451 -1 marR DNA-binding transcriptional regulator, MarR family Morganella morganii S1
1 group_1018 FBDBKF_05685 144294 144728 -1 slyA transcriptional regulator SlyA Morganella morganii S1
2 group_758 EHELCC_07145 167652 168089 1 marR DNA-binding transcriptional regulator, MarR family Morganella morganii S2
3 group_1018 EHELCC_11905 36766 37200 1 slyA transcriptional regulator SlyA Morganella morganii S2
4 group_758 NLDBIP_07470 167525 167962 1 marR DNA-binding transcriptional regulator, MarR family Morganella morganii S4
5 group_1018 NLDBIP_12245 36721 37155 1 slyA transcriptional regulator SlyA Morganella morganii S4
6 group_758 LHKJJB_07005 131271 131708 1 marR DNA-binding transcriptional regulator, MarR family Morganella morganii S3
7 group_1018 LHKJJB_12105 36766 37200 1 slyA transcriptional regulator SlyA Morganella morganii S3
8 group_758 HKOGLL_03925 101679 102116 -1 marR DNA-binding transcriptional regulator, MarR family Morganella morganii S5
9 group_1018 HKOGLL_10720 36766 37200 1 slyA transcriptional regulator SlyA Morganella morganii S5
10 group_1018 F4V73_RS03620 769974 770408 1 slyA transcriptional regulator SlyA Morganella psychrotolerans
11 group_1673 F4V73_RS08050 1671352 1671774 1 MarR family transcriptional regulator Morganella psychrotolerans
12 group_1673 PMI_RS08980 1957841 1958281 1 MarR family transcriptional regulator Proteus mirabilis HI4320