Orthogroup:group_1716


Homologs in group_1716

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_11965 FBDBKF_11965 Morganella morganii S1 hmsP Biofilm formation regulator HmsP
EHELCC_14340 EHELCC_14340 Morganella morganii S2 hmsP Biofilm formation regulator HmsP
NLDBIP_15435 NLDBIP_15435 Morganella morganii S4 hmsP Biofilm formation regulator HmsP
LHKJJB_15175 LHKJJB_15175 Morganella morganii S3 hmsP Biofilm formation regulator HmsP
HKOGLL_14295 HKOGLL_14295 Morganella morganii S5 hmsP Biofilm formation regulator HmsP
F4V73_RS14690 F4V73_RS14690 Morganella psychrotolerans - HAMP domain-containing protein
PMI_RS14035 PMI_RS14035 Proteus mirabilis HI4320 - HAMP domain-containing protein

Distribution of group_1716 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1716 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1716

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1716.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 hmsP 5
2 - 2

Product

# Product Occurence
1 Biofilm formation regulator HmsP 5
2 HAMP domain-containing protein 2

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG2770 1 T Signal transduction mechanisms (T) HAMP domain
COG5000 1 T Signal transduction mechanisms (T) Signal transduction histidine kinase NtrY involved in nitrogen fixation and metabolism regulation

Pfam domain Annotation(s)

Domain ID Occurences Description
PF17154 7 Gammaproteobacterial periplasmic sensor domain

Annotations of the 1 SwissProt hits

Annotation Number of occurrences
Probable cyclic di-GMP phosphodiesterase PdeK 1

Protein length

Min length 235
Max length 236
Mean length (sd) 235.1 (0.4)
Median length 235.0

Protein length distribution