Help to interpret the results
Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF12800, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains
within the database. 20 occurences are identified.
The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.
# | Orthogroup | Locus | Start | Stop | S. | Gene | Product | Organism |
---|---|---|---|---|---|---|---|---|
0 | group_785 | FBDBKF_03635 | 129999 | 130547 | -1 | hydN | electron transport protein HydN | Morganella morganii S1 |
1 | group_71 | FBDBKF_08055 | 146934 | 147824 | -1 | fdxH | formate dehydrogenase subunit beta | Morganella morganii S1 |
2 | group_21 | FBDBKF_08075 | 154744 | 155385 | 1 | dmsB | DMSO/selenate family reductase complex B subunit | Morganella morganii S1 |
3 | group_785 | EHELCC_06900 | 116556 | 117104 | 1 | hydN | electron transport protein HydN | Morganella morganii S2 |
4 | group_71 | EHELCC_13885 | 121128 | 122018 | -1 | fdxH | formate dehydrogenase subunit beta | Morganella morganii S2 |
5 | group_21 | EHELCC_13905 | 128938 | 129579 | 1 | dmsB | DMSO/selenate family reductase complex B subunit | Morganella morganii S2 |
6 | group_785 | NLDBIP_07225 | 116429 | 116977 | 1 | hydN | electron transport protein HydN | Morganella morganii S4 |
7 | group_71 | NLDBIP_14330 | 142003 | 142893 | -1 | fdxH | formate dehydrogenase subunit beta | Morganella morganii S4 |
8 | group_21 | NLDBIP_14350 | 149813 | 150454 | 1 | dmsB | DMSO/selenate family reductase complex B subunit | Morganella morganii S4 |
9 | group_785 | LHKJJB_06760 | 80175 | 80723 | 1 | hydN | electron transport protein HydN | Morganella morganii S3 |
10 | group_21 | LHKJJB_08500 | 9295 | 9936 | -1 | dmsB | DMSO/selenate family reductase complex B subunit | Morganella morganii S3 |
11 | group_71 | LHKJJB_08520 | 16856 | 17746 | 1 | fdxH | formate dehydrogenase subunit beta | Morganella morganii S3 |
12 | group_785 | HKOGLL_04170 | 152664 | 153212 | -1 | hydN | electron transport protein HydN | Morganella morganii S5 |
13 | group_21 | HKOGLL_08050 | 9295 | 9936 | -1 | dmsB | DMSO/selenate family reductase complex B subunit | Morganella morganii S5 |
14 | group_71 | HKOGLL_08070 | 16856 | 17746 | 1 | fdxH | formate dehydrogenase subunit beta | Morganella morganii S5 |
15 | group_785 | F4V73_RS11230 | 388080 | 388628 | 1 | hydN | electron transport protein HydN | Morganella psychrotolerans |
16 | group_21 | F4V73_RS12920 | 190347 | 190991 | -1 | DMSO/selenate family reductase complex B subunit | Morganella psychrotolerans | |
17 | group_21 | PMI_RS00340 | 98095 | 98724 | -1 | ferredoxin-like protein | Proteus mirabilis HI4320 | |
18 | group_21 | PMI_RS14660 | 3249614 | 3250255 | 1 | dmsB | dimethylsulfoxide reductase subunit B | Proteus mirabilis HI4320 |
19 | group_785 | PMI_RS17815 | 3915209 | 3915766 | 1 | hydN | electron transport protein HydN | Proteus mirabilis HI4320 |