PF12800


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF12800, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 20 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF12800
Description 4Fe-4S binding domain

Occurence in the database

PF12800 is associated with 20 different proteins (see tab "Protein list" and "Profile")
The 20 proteins are classified into 3 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_785 FBDBKF_03635 129999 130547 -1 hydN electron transport protein HydN Morganella morganii S1
1 group_71 FBDBKF_08055 146934 147824 -1 fdxH formate dehydrogenase subunit beta Morganella morganii S1
2 group_21 FBDBKF_08075 154744 155385 1 dmsB DMSO/selenate family reductase complex B subunit Morganella morganii S1
3 group_785 EHELCC_06900 116556 117104 1 hydN electron transport protein HydN Morganella morganii S2
4 group_71 EHELCC_13885 121128 122018 -1 fdxH formate dehydrogenase subunit beta Morganella morganii S2
5 group_21 EHELCC_13905 128938 129579 1 dmsB DMSO/selenate family reductase complex B subunit Morganella morganii S2
6 group_785 NLDBIP_07225 116429 116977 1 hydN electron transport protein HydN Morganella morganii S4
7 group_71 NLDBIP_14330 142003 142893 -1 fdxH formate dehydrogenase subunit beta Morganella morganii S4
8 group_21 NLDBIP_14350 149813 150454 1 dmsB DMSO/selenate family reductase complex B subunit Morganella morganii S4
9 group_785 LHKJJB_06760 80175 80723 1 hydN electron transport protein HydN Morganella morganii S3
10 group_21 LHKJJB_08500 9295 9936 -1 dmsB DMSO/selenate family reductase complex B subunit Morganella morganii S3
11 group_71 LHKJJB_08520 16856 17746 1 fdxH formate dehydrogenase subunit beta Morganella morganii S3
12 group_785 HKOGLL_04170 152664 153212 -1 hydN electron transport protein HydN Morganella morganii S5
13 group_21 HKOGLL_08050 9295 9936 -1 dmsB DMSO/selenate family reductase complex B subunit Morganella morganii S5
14 group_71 HKOGLL_08070 16856 17746 1 fdxH formate dehydrogenase subunit beta Morganella morganii S5
15 group_785 F4V73_RS11230 388080 388628 1 hydN electron transport protein HydN Morganella psychrotolerans
16 group_21 F4V73_RS12920 190347 190991 -1 DMSO/selenate family reductase complex B subunit Morganella psychrotolerans
17 group_21 PMI_RS00340 98095 98724 -1 ferredoxin-like protein Proteus mirabilis HI4320
18 group_21 PMI_RS14660 3249614 3250255 1 dmsB dimethylsulfoxide reductase subunit B Proteus mirabilis HI4320
19 group_785 PMI_RS17815 3915209 3915766 1 hydN electron transport protein HydN Proteus mirabilis HI4320