Orthogroup:group_62


Homologs in group_62

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13 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_08055 FBDBKF_08055 Morganella morganii S1 fdxH formate dehydrogenase subunit beta
FBDBKF_16125 FBDBKF_16125 Morganella morganii S1 fdxH formate dehydrogenase subunit beta
EHELCC_13885 EHELCC_13885 Morganella morganii S2 fdxH formate dehydrogenase subunit beta
EHELCC_16160 EHELCC_16160 Morganella morganii S2 fdxH formate dehydrogenase subunit beta
NLDBIP_14330 NLDBIP_14330 Morganella morganii S4 fdxH formate dehydrogenase subunit beta
NLDBIP_17180 NLDBIP_17180 Morganella morganii S4 fdxH formate dehydrogenase subunit beta
LHKJJB_08520 LHKJJB_08520 Morganella morganii S3 fdxH formate dehydrogenase subunit beta
LHKJJB_17100 LHKJJB_17100 Morganella morganii S3 fdxH formate dehydrogenase subunit beta
HKOGLL_08070 HKOGLL_08070 Morganella morganii S5 fdxH formate dehydrogenase subunit beta
HKOGLL_16740 HKOGLL_16740 Morganella morganii S5 fdxH formate dehydrogenase subunit beta
F4V73_RS12940 F4V73_RS12940 Morganella psychrotolerans fdxH formate dehydrogenase subunit beta
F4V73_RS17490 F4V73_RS17490 Morganella psychrotolerans fdxH formate dehydrogenase subunit beta
PMI_RS15390 PMI_RS15390 Proteus mirabilis HI4320 fdxH formate dehydrogenase subunit beta

Distribution of group_62 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_62 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_62

Orthogroup content: 13 members

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This page summarizes the annotation of all members of the orthologous group group_62.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 fdxH 13

Product

# Product Occurence
1 formate dehydrogenase subunit beta 13

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0437 13 C Energy production and conversion (C) Fe-S-cluster-containing dehydrogenase component (DMSO reductase)

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K00124 7 formate dehydrogenase iron-sulfur subunit Glyoxylate and dicarboxylate metabolism
Methane metabolism
Metabolic pathways
Microbial metabolism in diverse environments
Carbon metabolism		 -
K08349 6 formate dehydrogenase-N, beta subunit Two-component system -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF09163 13 Formate dehydrogenase N, transmembrane
PF12800 5 4Fe-4S binding domain
PF13247 13 4Fe-4S dicluster domain

Annotations of the 64 SwissProt hits

Annotation Number of occurrences
Anaerobic dimethyl sulfoxide reductase chain B 3
Arsenate respiratory reductase iron-sulfur subunit ArrB 1
Chlorate reductase subunit beta 1
Dimethylsulfide dehydrogenase subunit beta 1
Electron transport protein HydN 3
Formate dehydrogenase 2 subunit beta (cytochrome c-553) 1
Formate dehydrogenase iron-sulfur subunit 2
Formate dehydrogenase subunit beta 1
Formate dehydrogenase, nitrate-inducible, iron-sulfur subunit 2
Formate dehydrogenase-O iron-sulfur subunit 3
Frd operon probable iron-sulfur subunit A (Fragment) 1
Hdr-like menaquinol oxidoreductase iron-sulfur subunit 1 1
Hydrogenase-2 operon protein HybA 3
Hydrogenase-4 component A 1
Iron-sulfur protein 1
L-aspartate semialdehyde sulfurtransferase iron-sulfur subunit 2
Menaquinone reductase, iron-sulfur cluster-binding subunit 1
NADH-dependent phenylglyoxylate dehydrogenase subunit beta 1
Nitrate reductase beta chain 1
Perchlorate reductase subunit beta 1
Polysulfide reductase chain B 1
Probable anaerobic dimethyl sulfoxide reductase chain YnfG 2
Protein DVU_0535 1
Protein NrfC 3
Protein NrfC homolog 1
Putative dimethyl sulfoxide reductase iron-sulfur subunit B 1
Putative electron transport protein YgfS 1
Putative electron transport protein YsaA 1
Putative oxidoreductase AegA 1
Putative oxidoreductase UacF 1
Pyrogallol hydroxytransferase small subunit 1
Respiratory nitrate reductase 1 beta chain 2
Respiratory nitrate reductase 2 beta chain 1
Respiratory nitrate reductase beta chain (Fragments) 1
Respiratory nitrate reductase subunit beta 1
Selenate reductase subunit beta 1
Sulfite dehydrogenase subunit B 1
Tetrathionate reductase subunit B 2
Thiosulfate reductase electron transfer subunit PhsB 2
Uncharacterized ferredoxin MJ0155 1
Uncharacterized ferredoxin MJ0265 1
Uncharacterized ferredoxin-like protein YdhX 2
Uncharacterized ferredoxin-like protein YdhY 3
Uncharacterized protein MJ0264 1

Protein length

Min length 296
Max length 313
Mean length (sd) 305.2 (8.7)
Median length 312.0

Protein length distribution