Orthogroup:group_62


Homologs in group_62

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13 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_02505 FBDBKF_02505 Morganella morganii S1 roxA Ribosomal protein L16 Arg81 hydroxylase, contains JmjC domain
FBDBKF_14585 FBDBKF_14585 Morganella morganii S1 roxA Ribosomal protein L16 Arg81 hydroxylase, contains JmjC domain
EHELCC_02975 EHELCC_02975 Morganella morganii S2 roxA Ribosomal protein L16 Arg81 hydroxylase, contains JmjC domain
EHELCC_15390 EHELCC_15390 Morganella morganii S2 roxA Ribosomal protein L16 Arg81 hydroxylase, contains JmjC domain
NLDBIP_00485 NLDBIP_00485 Morganella morganii S4 roxA Ribosomal protein L16 Arg81 hydroxylase, contains JmjC domain
NLDBIP_15920 NLDBIP_15920 Morganella morganii S4 roxA Ribosomal protein L16 Arg81 hydroxylase, contains JmjC domain
LHKJJB_01550 LHKJJB_01550 Morganella morganii S3 roxA Ribosomal protein L16 Arg81 hydroxylase, contains JmjC domain
LHKJJB_15920 LHKJJB_15920 Morganella morganii S3 roxA Ribosomal protein L16 Arg81 hydroxylase, contains JmjC domain
HKOGLL_01590 HKOGLL_01590 Morganella morganii S5 roxA Ribosomal protein L16 Arg81 hydroxylase, contains JmjC domain
HKOGLL_15040 HKOGLL_15040 Morganella morganii S5 roxA Ribosomal protein L16 Arg81 hydroxylase, contains JmjC domain
F4V73_RS02440 F4V73_RS02440 Morganella psychrotolerans - cupin domain-containing protein
F4V73_RS07380 F4V73_RS07380 Morganella psychrotolerans - cupin domain-containing protein
PMI_RS04340 PMI_RS04340 Proteus mirabilis HI4320 - cupin domain-containing protein

Distribution of group_62 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_62 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_62

Orthogroup content: 13 members

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This page summarizes the annotation of all members of the orthologous group group_62.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 roxA 10
2 - 3

Product

# Product Occurence
1 Ribosomal protein L16 Arg81 hydroxylase, contains JmjC domain 10
2 cupin domain-containing protein 3

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG2850 13 J Translation, ribosomal structure and biogenesis (J) Ribosomal protein L16 Arg81 hydroxylase, contains JmjC domain

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K18850 13 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47] - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF08007 13 JmjC domain
PF20514 13 ROXA-like winged helix

Annotations of the 28 SwissProt hits

Annotation Number of occurrences
Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 18
Probable ribosomal oxygenase HI_0396 1
Ribosomal oxygenase 1 6
Ribosomal oxygenase 2 1
Ribosomal protein uL16 3-hydroxylase 1
Uncharacterized protein YxbC 1

Protein length

Unique protein length 373

Protein length distribution