Homologs in group_21

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18 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_08075 FBDBKF_08075 87.8 Morganella morganii S1 dmsB DMSO/selenate family reductase complex B subunit
FBDBKF_10455 FBDBKF_10455 50.0 Morganella morganii S1 dmsB DMSO/selenate family reductase complex B subunit
EHELCC_13905 EHELCC_13905 87.8 Morganella morganii S2 dmsB DMSO/selenate family reductase complex B subunit
EHELCC_14790 EHELCC_14790 50.0 Morganella morganii S2 dmsB DMSO/selenate family reductase complex B subunit
NLDBIP_14350 NLDBIP_14350 87.8 Morganella morganii S4 dmsB DMSO/selenate family reductase complex B subunit
NLDBIP_14620 NLDBIP_14620 50.0 Morganella morganii S4 dmsB DMSO/selenate family reductase complex B subunit
LHKJJB_08500 LHKJJB_08500 87.8 Morganella morganii S3 dmsB DMSO/selenate family reductase complex B subunit
LHKJJB_14725 LHKJJB_14725 50.0 Morganella morganii S3 dmsB DMSO/selenate family reductase complex B subunit
HKOGLL_08050 HKOGLL_08050 87.8 Morganella morganii S5 dmsB DMSO/selenate family reductase complex B subunit
HKOGLL_13345 HKOGLL_13345 50.0 Morganella morganii S5 dmsB DMSO/selenate family reductase complex B subunit
F4V73_RS05065 F4V73_RS05065 72.6 Morganella psychrotolerans - DMSO/selenate family reductase complex B subunit
F4V73_RS12920 F4V73_RS12920 86.4 Morganella psychrotolerans - DMSO/selenate family reductase complex B subunit
F4V73_RS14155 F4V73_RS14155 50.0 Morganella psychrotolerans - DMSO/selenate family reductase complex B subunit
PMI_RS00325 PMI_RS00325 31.9 Proteus mirabilis HI4320 - 4Fe-4S dicluster domain-containing protein
PMI_RS00340 PMI_RS00340 32.1 Proteus mirabilis HI4320 - ferredoxin-like protein
PMI_RS00820 PMI_RS00820 44.1 Proteus mirabilis HI4320 - 4Fe-4S dicluster domain-containing protein
PMI_RS05815 PMI_RS05815 71.2 Proteus mirabilis HI4320 dmsB dimethylsulfoxide reductase subunit B
PMI_RS08350 PMI_RS08350 49.5 Proteus mirabilis HI4320 dmsB dimethylsulfoxide reductase subunit B

Distribution of the homologs in the orthogroup group_21

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_21

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AAJ1 9.26e-70 214 54 2 186 3 ynfG Probable anaerobic dimethyl sulfoxide reductase chain YnfG Escherichia coli (strain K12)
P0AAJ2 9.26e-70 214 54 2 186 3 ynfG Probable anaerobic dimethyl sulfoxide reductase chain YnfG Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P18776 4.31e-69 213 53 2 186 1 dmsB Anaerobic dimethyl sulfoxide reductase chain B Escherichia coli (strain K12)
Q83RZ7 5.03e-69 213 53 2 186 3 dmsB Anaerobic dimethyl sulfoxide reductase chain B Shigella flexneri
P45003 2.61e-66 206 50 1 189 3 dmsB Anaerobic dimethyl sulfoxide reductase chain B Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
D3RNN7 1.63e-30 115 35 4 187 1 soeB Sulfite dehydrogenase subunit B Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 / NCIMB 10441 / D)
P44450 9.34e-28 109 34 4 166 3 fdxH Formate dehydrogenase iron-sulfur subunit Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P0A1I1 4.65e-27 105 39 6 160 1 phsB Thiosulfate reductase electron transfer subunit PhsB Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A1I2 4.65e-27 105 39 6 160 3 phsB Thiosulfate reductase electron transfer subunit PhsB Salmonella typhi
P0AAJ4 7.19e-26 104 33 3 166 3 fdnH Formate dehydrogenase, nitrate-inducible, iron-sulfur subunit Shigella flexneri
P0AAJ3 7.19e-26 104 33 3 166 1 fdnH Formate dehydrogenase, nitrate-inducible, iron-sulfur subunit Escherichia coli (strain K12)
P0AAJ7 1.53e-25 103 32 4 176 3 fdoH Formate dehydrogenase-O iron-sulfur subunit Shigella flexneri
P0AAJ5 1.53e-25 103 32 4 176 1 fdoH Formate dehydrogenase-O iron-sulfur subunit Escherichia coli (strain K12)
P0AAJ6 1.53e-25 103 32 4 176 3 fdoH Formate dehydrogenase-O iron-sulfur subunit Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q7CQM9 1.87e-25 102 36 4 165 1 ttrB Tetrathionate reductase subunit B Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P31076 1.92e-25 100 35 6 192 4 psrB Polysulfide reductase chain B Wolinella succinogenes (strain ATCC 29543 / DSM 1740 / CCUG 13145 / JCM 31913 / LMG 7466 / NCTC 11488 / FDC 602W)
Q9HR73 1.09e-24 100 34 5 178 2 dmsB Putative dimethyl sulfoxide reductase iron-sulfur subunit B Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
P27273 1.49e-24 99 34 5 189 1 fdhB1 Formate dehydrogenase iron-sulfur subunit Wolinella succinogenes (strain ATCC 29543 / DSM 1740 / CCUG 13145 / JCM 31913 / LMG 7466 / NCTC 11488 / FDC 602W)
O30080 8.33e-24 97 35 5 153 3 ttrB Tetrathionate reductase subunit B Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)
Q727P4 1.25e-23 97 34 5 175 1 DVU_2811 Formate dehydrogenase 2 subunit beta (cytochrome c-553) Nitratidesulfovibrio vulgaris (strain ATCC 29579 / DSM 644 / CCUG 34227 / NCIMB 8303 / VKM B-1760 / Hildenborough)
P0AAK9 8.58e-22 92 36 3 161 3 nrfC Protein NrfC Shigella flexneri
P0AAK7 8.58e-22 92 36 3 161 3 nrfC Protein NrfC Escherichia coli (strain K12)
P0AAK8 8.58e-22 92 36 3 161 3 nrfC Protein NrfC Escherichia coli O157:H7
Q47CW7 1.08e-21 94 29 6 253 1 pcrB Perchlorate reductase subunit beta Dechloromonas aromatica (strain RCB)
P77375 1.3e-20 89 34 3 150 2 ydhX Uncharacterized ferredoxin-like protein YdhX Escherichia coli (strain K12)
P0AAK0 2.55e-20 90 35 6 174 3 hybA Hydrogenase-2 operon protein HybA Shigella flexneri
P0AAJ8 2.55e-20 90 35 6 174 3 hybA Hydrogenase-2 operon protein HybA Escherichia coli (strain K12)
P0AAJ9 2.55e-20 90 35 6 174 3 hybA Hydrogenase-2 operon protein HybA Escherichia coli O157:H7
Q8X616 3.24e-20 88 34 3 150 3 ydhX Uncharacterized ferredoxin-like protein YdhX Escherichia coli O157:H7
Q7WTT9 1.52e-19 86 28 5 212 1 arrB Arsenate respiratory reductase iron-sulfur subunit ArrB Shewanella sp. (strain ANA-3)
Q9S1G9 7.22e-19 86 27 8 261 1 serB Selenate reductase subunit beta Thauera selenatis
P45015 2.12e-18 83 33 4 158 3 nrfC Protein NrfC homolog Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P60069 2.19e-18 85 27 8 261 1 clrB Chlorate reductase subunit beta Ideonella dechloratans
Q8GPG3 2.97e-16 79 26 6 234 1 ddhB Dimethylsulfide dehydrogenase subunit beta Rhodovulum sulfidophilum
P11349 6.15e-16 79 33 1 124 1 narH Respiratory nitrate reductase 1 beta chain Escherichia coli (strain K12)
Q83RN5 6.21e-16 79 33 1 124 3 narH Respiratory nitrate reductase 1 beta chain Shigella flexneri
P19318 1.15e-15 78 39 1 99 1 narY Respiratory nitrate reductase 2 beta chain Escherichia coli (strain K12)
P42176 4.04e-15 76 38 1 99 3 narH Nitrate reductase beta chain Bacillus subtilis (strain 168)
P0AAL8 5.75e-15 73 31 4 145 4 ydhY Uncharacterized ferredoxin-like protein YdhY Shigella flexneri
P0AAL6 5.75e-15 73 31 4 145 2 ydhY Uncharacterized ferredoxin-like protein YdhY Escherichia coli (strain K12)
P0AAL7 5.75e-15 73 31 4 145 4 ydhY Uncharacterized ferredoxin-like protein YdhY Escherichia coli O157:H7
I3R9M8 1.33e-14 74 27 10 265 1 narH Respiratory nitrate reductase subunit beta Haloferax mediterranei (strain ATCC 33500 / DSM 1411 / JCM 8866 / NBRC 14739 / NCIMB 2177 / R-4)
Q8GC87 3.42e-14 71 29 6 179 1 fdhB Formate dehydrogenase subunit beta Megalodesulfovibrio gigas (strain ATCC 19364 / DSM 1382 / NCIMB 9332 / VKM B-1759)
Q46820 1.56e-13 72 27 8 207 2 uacF Putative oxidoreductase UacF Escherichia coli (strain K12)
Q46819 1.63e-13 68 27 5 159 4 ygfS Putative electron transport protein YgfS Escherichia coli (strain K12)
P33389 1.65e-13 71 32 5 171 4 DVU_0535 Protein DVU_0535 Nitratidesulfovibrio vulgaris (strain ATCC 29579 / DSM 644 / CCUG 34227 / NCIMB 8303 / VKM B-1760 / Hildenborough)
Q8L3A9 3.17e-13 71 31 4 147 1 padI NADH-dependent phenylglyoxylate dehydrogenase subunit beta Aromatoleum evansii
O29751 3.52e-13 69 27 11 242 1 hmeA Hdr-like menaquinol oxidoreductase iron-sulfur subunit 1 Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)
Q72E85 4.32e-13 69 29 7 207 1 qrcC Menaquinone reductase, iron-sulfur cluster-binding subunit Nitratidesulfovibrio vulgaris (strain ATCC 29579 / DSM 644 / CCUG 34227 / NCIMB 8303 / VKM B-1760 / Hildenborough)
P56256 1.63e-12 65 24 4 155 4 ysaA Putative electron transport protein YsaA Escherichia coli (strain K12)
P85098 8.83e-12 65 32 5 144 1 narH Respiratory nitrate reductase beta chain (Fragments) Bradyrhizobium sp.
P31894 1.57e-11 63 27 5 167 1 cooF Iron-sulfur protein Rhodospirillum rubrum
Q57713 1e-10 61 29 4 125 3 MJ0265 Uncharacterized ferredoxin MJ0265 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
P0AAK4 1.2e-10 61 25 5 186 3 hydN Electron transport protein HydN Escherichia coli (strain K12)
P0AAK5 1.2e-10 61 25 5 186 3 hydN Electron transport protein HydN Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AAK6 1.2e-10 61 25 5 186 3 hydN Electron transport protein HydN Escherichia coli O157:H7
P37127 2.99e-10 62 26 5 156 2 aegA Putative oxidoreductase AegA Escherichia coli (strain K12)
Q57712 4.03e-10 59 37 3 98 3 MJ0264 Uncharacterized protein MJ0264 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
P20925 9.72e-10 58 28 6 133 4 None Frd operon probable iron-sulfur subunit A (Fragment) Proteus vulgaris
Q57619 1.72e-08 55 30 4 114 3 MJ0155 Uncharacterized ferredoxin MJ0155 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
P80564 1.13e-06 51 27 6 166 1 bthL Pyrogallol hydroxytransferase small subunit Pelobacter acidigallici
P23481 1.72e-06 50 22 5 190 2 hyfA Hydrogenase-4 component A Escherichia coli (strain K12)
P00195 1.47e-05 44 42 2 57 1 None Ferredoxin Clostridium pasteurianum
O27719 1.86e-05 48 35 1 70 4 MTH_1684 Uncharacterized protein MTH_1684 Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
P00202 8.5e-05 42 45 0 44 1 None Ferredoxin Methanosarcina barkeri
P0AAK3 0.000102 45 23 8 199 3 hycB Formate hydrogenlyase subunit 2 Shigella flexneri
P0AAK1 0.000102 45 23 8 199 1 hycB Formate hydrogenlyase subunit 2 Escherichia coli (strain K12)
P0AAK2 0.000102 45 23 8 199 3 hycB Formate hydrogenlyase subunit 2 Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q9UYZ0 0.000149 43 48 1 49 3 vorD Ketoisovalerate oxidoreductase subunit VorD Pyrococcus abyssi (strain GE5 / Orsay)
O58412 0.000157 43 48 1 49 3 vorD Ketoisovalerate oxidoreductase subunit VorD Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
P00194 0.000308 40 41 2 56 1 None Ferredoxin-1 Rhodospirillum rubrum
P07508 0.000513 40 38 2 57 1 None Ferredoxin Acetivibrio thermocellus
P00196 0.000556 40 37 2 59 1 None Ferredoxin Clostridium butyricum
P81901 0.000695 41 38 1 59 1 Pisl_1904 Ferredoxin Pyrobaculum islandicum (strain DSM 4184 / JCM 9189 / GEO3)
Q92G41 0.000747 41 32 2 65 3 fdxA Ferredoxin Rickettsia conorii (strain ATCC VR-613 / Malish 7)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS14660
Feature type CDS
Gene dmsB
Product dimethylsulfoxide reductase subunit B
Location 3249614 - 3250255 (strand: 1)
Length 642 (nucleotides) / 213 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_21
Orthogroup size 19
N. genomes 7

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Genomic region

Domains

PF12800 4Fe-4S binding domain
PF13247 4Fe-4S dicluster domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0437 Energy production and conversion (C) C Fe-S-cluster-containing dehydrogenase component (DMSO reductase)

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K07307 anaerobic dimethyl sulfoxide reductase subunit B Sulfur metabolism
Metabolic pathways		 -

Protein Sequence

MSKFIVYPAVSSKQLGFYIDSARCSGCKACQVACKDKNNLDVGRKFRRVYEITGGGYSRNTNGALINNVFAYTLSISCNHCDDPICVKNCPTTAMHKREGDGIVMVDTDKCVGCGACAWSCPYGAPQMDPETKQMSKCDFCIDLQQKGEQPVCVATCPLGAIQFGPIDELRERYGEVNYVTGLPSPEITHPNLVINPHQGANNDTINNKGEIK

Flanking regions ( +/- flanking 50bp)

ATGGCACACGGTAATGCTCACCAAACTTTATTGGTCGAGGTAGTAAAAGCATGAGTAAATTTATCGTTTATCCCGCAGTAAGCAGTAAACAGCTAGGGTTTTATATCGACAGTGCTCGCTGTTCGGGCTGCAAGGCGTGTCAGGTTGCTTGTAAAGATAAAAATAACCTCGATGTTGGCCGCAAATTTCGCCGTGTATATGAAATCACTGGTGGTGGTTATAGCCGTAATACTAACGGTGCATTAATTAATAATGTCTTTGCTTACACTTTATCTATCTCTTGCAATCATTGCGATGATCCCATTTGTGTTAAAAACTGCCCAACTACCGCGATGCATAAACGCGAAGGTGATGGCATTGTGATGGTAGATACTGACAAATGTGTTGGTTGTGGCGCCTGTGCGTGGTCTTGTCCTTATGGCGCACCGCAAATGGATCCTGAAACCAAGCAGATGTCAAAATGCGATTTTTGTATCGACTTACAACAAAAAGGTGAACAGCCTGTTTGCGTTGCGACCTGCCCACTTGGGGCCATTCAATTTGGTCCAATTGATGAACTACGTGAACGCTATGGTGAAGTTAATTATGTCACTGGTTTGCCTTCTCCTGAAATAACTCATCCAAACCTAGTGATCAACCCTCACCAAGGGGCAAATAATGACACTATAAATAATAAAGGAGAAATAAAATGAATGAATGGTCATTATTGATTTTCACCTTTATGATGAATGCCACTATTGGC