PF11660


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF11660, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 11 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF11660
Description Protein of unknown function (DUF3262)

Occurence in the database

PF11660 is associated with 11 different proteins (see tab "Protein list" and "Profile")
The 11 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2638 FBDBKF_04005 199006 199245 -1 Integrating conjugative element protein Morganella morganii S1
1 group_3487 FBDBKF_16830 43816 44052 -1 TIGR03758 family integrating conjugative element protein Morganella morganii S1
2 group_2638 EHELCC_06530 47858 48097 1 Integrating conjugative element protein Morganella morganii S2
3 group_3487 EHELCC_10630 169719 169955 1 TIGR03758 family integrating conjugative element protein Morganella morganii S2
4 group_2638 NLDBIP_06855 47731 47970 1 Integrating conjugative element protein Morganella morganii S4
5 group_3487 NLDBIP_10975 147990 148226 1 TIGR03758 family integrating conjugative element protein Morganella morganii S4
6 group_2638 LHKJJB_06390 11477 11716 1 Integrating conjugative element protein Morganella morganii S3
7 group_3487 LHKJJB_10380 43302 43538 -1 TIGR03758 family integrating conjugative element protein Morganella morganii S3
8 group_2638 HKOGLL_04540 221671 221910 -1 Integrating conjugative element protein Morganella morganii S5
9 group_3487 HKOGLL_16545 43311 43547 -1 TIGR03758 family integrating conjugative element protein Morganella morganii S5
10 group_2638 PMI_RS12760 2821930 2822169 -1 TIGR03758 family integrating conjugative element protein Proteus mirabilis HI4320