PF09209


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF09209, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 14 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF09209
Description HTH-type transcriptional dual regulator CecR, C-terminal domain

Occurence in the database

PF09209 is associated with 14 different proteins (see tab "Protein list" and "Profile")
The 14 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1478 FBDBKF_09540 6362 7048 1 cecR transcriptional regulator CecR Morganella morganii S1
1 group_2439 FBDBKF_19940 7910 8572 -1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S1
2 group_1478 EHELCC_04340 198327 199013 1 cecR transcriptional regulator CecR Morganella morganii S2
3 group_2439 EHELCC_07675 6850 7512 1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S2
4 group_1478 NLDBIP_04340 198123 198809 1 cecR transcriptional regulator CecR Morganella morganii S4
5 group_2439 NLDBIP_08000 6850 7512 1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S4
6 group_2439 LHKJJB_06265 249647 250309 -1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S3
7 group_1478 LHKJJB_14290 136569 137255 -1 cecR transcriptional regulator CecR Morganella morganii S3
8 group_1478 HKOGLL_12245 7143 7829 1 cecR transcriptional regulator CecR Morganella morganii S5
9 group_2439 HKOGLL_19120 7916 8578 -1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA Morganella morganii S5
10 group_1478 F4V73_RS00825 171096 171782 -1 cecR transcriptional regulator CecR Morganella psychrotolerans
11 group_2439 F4V73_RS02425 513190 513852 1 CerR family C-terminal domain-containing protein Morganella psychrotolerans
12 group_1478 PMI_RS03050 672125 672823 -1 cecR transcriptional regulator CecR Proteus mirabilis HI4320
13 group_2439 PMI_RS09200 2004510 2005184 -1 CerR family C-terminal domain-containing protein Proteus mirabilis HI4320