PF08543


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF08543, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 14 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF08543
Description Phosphomethylpyrimidine kinase

Occurence in the database

PF08543 is associated with 14 different proteins (see tab "Protein list" and "Profile")
The 14 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1013 FBDBKF_05660 139234 140100 -1 pdxY pyridoxal kinase PdxY Morganella morganii S1
1 group_2182 FBDBKF_16435 10816 11613 1 thiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase Morganella morganii S1
2 group_2182 EHELCC_08300 127802 128599 1 thiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase Morganella morganii S2
3 group_1013 EHELCC_11930 41394 42260 1 pdxY pyridoxal kinase PdxY Morganella morganii S2
4 group_2182 NLDBIP_08625 127802 128599 1 thiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase Morganella morganii S4
5 group_1013 NLDBIP_12270 41349 42215 1 pdxY pyridoxal kinase PdxY Morganella morganii S4
6 group_2182 LHKJJB_05640 128560 129357 -1 thiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase Morganella morganii S3
7 group_1013 LHKJJB_12130 41394 42260 1 pdxY pyridoxal kinase PdxY Morganella morganii S3
8 group_2182 HKOGLL_05275 112393 113190 1 thiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase Morganella morganii S5
9 group_1013 HKOGLL_10745 41394 42260 1 pdxY pyridoxal kinase PdxY Morganella morganii S5
10 group_2182 F4V73_RS02955 626326 627123 1 thiD bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase Morganella psychrotolerans
11 group_1013 F4V73_RS03645 774859 775725 1 pdxY pyridoxal kinase PdxY Morganella psychrotolerans
12 group_1013 PMI_RS06690 1463166 1464035 -1 pdxY pyridoxal kinase PdxY Proteus mirabilis HI4320
13 group_2182 PMI_RS07770 1701689 1702486 -1 thiD bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase Proteus mirabilis HI4320