Homologs in group_2182

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_16435 FBDBKF_16435 71.7 Morganella morganii S1 thiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase
EHELCC_08300 EHELCC_08300 71.7 Morganella morganii S2 thiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase
NLDBIP_08625 NLDBIP_08625 71.7 Morganella morganii S4 thiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase
LHKJJB_05640 LHKJJB_05640 71.7 Morganella morganii S3 thiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase
HKOGLL_05275 HKOGLL_05275 71.7 Morganella morganii S5 thiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase
F4V73_RS02955 F4V73_RS02955 72.8 Morganella psychrotolerans thiD bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase

Distribution of the homologs in the orthogroup group_2182

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2182

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P55882 7.15e-133 379 68 0 264 1 thiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P76422 8.28e-131 374 67 0 264 1 thiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase Escherichia coli (strain K12)
P56904 1.29e-84 256 52 1 265 3 thiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase Rhizobium meliloti (strain 1021)
P44697 4.91e-64 204 46 4 246 3 thiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q8NVH3 2.18e-63 202 41 6 260 3 thiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase Staphylococcus aureus (strain MW2)
Q6G7L7 2.18e-63 202 41 6 260 3 thiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase Staphylococcus aureus (strain MSSA476)
P99124 5.96e-63 201 41 6 260 1 thiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase Staphylococcus aureus (strain N315)
P66915 5.96e-63 201 41 6 260 3 thiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q6GEY2 1.19e-62 201 41 6 260 3 thiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase Staphylococcus aureus (strain MRSA252)
P61422 1.36e-60 202 44 2 243 3 thiDE Thiamine biosynthesis bifunctional protein ThiED Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA)
O25515 1.17e-57 188 43 3 257 3 thiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase Helicobacter pylori (strain ATCC 700392 / 26695)
Q8FTH8 1.2e-57 199 44 2 257 3 thiED Thiamine biosynthesis multifunctional protein ThiED Corynebacterium efficiens (strain DSM 44549 / YS-314 / AJ 12310 / JCM 11189 / NBRC 100395)
O31620 6.85e-57 186 43 3 260 1 thiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase Bacillus subtilis (strain 168)
Q9ZL00 2.66e-56 184 43 3 257 3 thiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase Helicobacter pylori (strain J99 / ATCC 700824)
O67772 7.14e-56 182 39 2 251 3 thiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase Aquifex aeolicus (strain VF5)
Q8NQH1 9.57e-56 194 44 5 262 3 theD Thiamine biosynthesis multifunctional protein ThiED Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / BCRC 11384 / CCUG 27702 / LMG 3730 / NBRC 12168 / NCIMB 10025 / NRRL B-2784 / 534)
Q5M731 1.49e-53 184 42 4 259 1 TH1 Thiamine biosynthetic bifunctional enzyme TH1, chloroplastic Arabidopsis thaliana
O48881 6e-53 182 41 2 258 1 BTH1 Thiamine biosynthetic bifunctional enzyme BTH1, chloroplastic Brassica napus
Q2QWK9 2.6e-44 160 35 2 247 2 Os12g0192500 Probable thiamine biosynthetic bifunctional enzyme, chloroplastic Oryza sativa subsp. japonica
O94266 8.93e-43 155 40 5 234 3 SPBP8B7.18c Putative hydroxymethylpyrimidine/phosphomethylpyrimidine kinase 2 Schizosaccharomyces pombe (strain 972 / ATCC 24843)
P39610 5.5e-42 147 34 3 261 1 pdxK Pyridoxine kinase Bacillus subtilis (strain 168)
Q9ZBR6 1.38e-40 144 38 4 242 3 thiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
O85786 2.19e-38 138 41 4 259 3 thiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase Synechococcus elongatus (strain ATCC 33912 / PCC 7942 / FACHB-805)
O94265 6.93e-38 142 32 6 275 3 SPBP8B7.17c Putative hydroxymethylpyrimidine/phosphomethylpyrimidine kinase 1 Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Q9ZBL1 2.77e-37 135 36 6 247 3 thiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase Mycobacterium leprae (strain TN)
Q5HI96 1.41e-34 128 34 6 259 3 pdxK Putative pyridoxine kinase Staphylococcus aureus (strain COL)
P9WG77 1.63e-34 128 38 5 263 1 thiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WG76 1.63e-34 128 38 5 263 3 thiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P66914 1.63e-34 128 38 5 263 3 thiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
Q9USL6 1.46e-33 127 34 6 234 3 SPCC18B5.05c Putative hydroxymethylpyrimidine/phosphomethylpyrimidine kinase C18B5.05c Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Q8CTQ7 2.28e-33 125 33 6 259 3 pdxK Putative pyridoxine kinase Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200)
Q5HRG7 7.08e-33 124 33 6 259 3 pdxK Putative pyridoxine kinase Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)
A0A0J9X285 1.65e-32 122 33 5 253 1 ACINIS123_0279 Hydroxylmethylpyrimidine kinase Acinetobacter baumannii (strain IS-123)
Q06490 2.71e-28 116 30 6 269 2 THI22 Thiamine biosynthesis protein THI22 Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Q08975 8.19e-28 114 34 6 270 1 THI21 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase THI21 Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Q08224 5.9e-26 109 34 6 270 1 THI20 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase THI20 Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
O83153 2.3e-24 101 33 2 219 3 pdxK Putative pyridoxine kinase Treponema pallidum (strain Nichols)
Q57688 4.17e-23 100 26 6 254 1 thiDN Bifunctional thiamine biosynthesis protein ThiDN Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q9WZP7 1.54e-11 67 26 8 244 1 thiDN Bifunctional thiamine biosynthesis protein ThiDN Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS07770
Feature type CDS
Gene thiD
Product bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase
Location 1701689 - 1702486 (strand: -1)
Length 798 (nucleotides) / 265 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_2182
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF08543 Phosphomethylpyrimidine kinase

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0351 Coenzyme transport and metabolism (H) H Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase

Kegg Ortholog Annotation(s)

Protein Sequence

MRYNALSIAGTDPSGGAGIQADLKTFSALGVYGTTVMTALVAQNTCGVHSVYDLSPDFVAAQLDAVLSDVRIDSAKIGMLSNASIIDVVCDKLQQYPIPFVVLDTVMLAKSGDPLLQPDAIDKMFTQLLPRVDLITPNLPEAAALLGCDIATDETTMKQQGEALLYQGCQAVLMKGGHLSEKESPDWLLTQDGQWRFTSPRINTKNTHGTGCTLSAALAAIRPQVSDWQSCVEQAKAYLQQALEQADSLEVGQGFGPVHHFHRWW

Flanking regions ( +/- flanking 50bp)

TGATTAACAGAGCCCGACTTTTCTGTAACTGGTAAAGGAGGAGTTAATCAGTGAGATATAACGCGTTGTCTATCGCCGGCACCGATCCGAGTGGTGGGGCGGGGATACAGGCTGATCTGAAAACATTTTCCGCACTGGGTGTATATGGCACAACAGTCATGACTGCACTGGTAGCGCAAAATACCTGTGGTGTACACTCTGTCTATGATTTATCCCCAGATTTTGTCGCAGCACAATTAGATGCGGTACTTTCTGATGTCAGAATAGATAGCGCTAAAATTGGTATGCTTTCTAATGCCAGTATTATTGATGTCGTTTGCGATAAACTGCAGCAATATCCCATTCCTTTTGTCGTACTTGATACTGTTATGCTTGCCAAAAGCGGCGATCCACTGTTACAACCTGATGCTATTGATAAAATGTTCACTCAGTTATTACCCCGCGTTGATTTGATCACGCCAAATCTGCCTGAGGCGGCAGCACTATTAGGTTGTGATATCGCGACAGATGAAACAACTATGAAACAACAAGGTGAAGCATTACTTTATCAAGGTTGTCAGGCGGTATTGATGAAAGGGGGCCATTTAAGCGAGAAAGAAAGTCCTGATTGGTTATTGACCCAAGATGGGCAATGGCGATTTACTTCACCGCGCATCAATACAAAAAATACTCACGGTACGGGATGCACACTTTCAGCCGCTTTAGCTGCTATTCGTCCTCAAGTTTCTGATTGGCAAAGTTGTGTTGAACAAGCAAAAGCCTATTTACAGCAAGCGTTAGAACAGGCAGACAGTTTAGAGGTGGGACAAGGTTTCGGCCCTGTACATCATTTTCATCGCTGGTGGTGATATCAAAAAGCCCCTATTAAAGGGGCTTCAATGCGTAATTTAATCGTAAA