Orthogroup:group_1080


Homologs in group_1080

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_06140 FBDBKF_06140 Morganella morganii S1 amiC N-acetylmuramoyl-L-alanine amidase AmiC
EHELCC_09185 EHELCC_09185 Morganella morganii S2 amiC N-acetylmuramoyl-L-alanine amidase AmiC
NLDBIP_09565 NLDBIP_09565 Morganella morganii S4 amiC N-acetylmuramoyl-L-alanine amidase AmiC
LHKJJB_08190 LHKJJB_08190 Morganella morganii S3 amiC N-acetylmuramoyl-L-alanine amidase AmiC
HKOGLL_07740 HKOGLL_07740 Morganella morganii S5 amiC N-acetylmuramoyl-L-alanine amidase AmiC
F4V73_RS15775 F4V73_RS15775 Morganella psychrotolerans amiC N-acetylmuramoyl-L-alanine amidase AmiC
PMI_RS11405 PMI_RS11405 Proteus mirabilis HI4320 amiC N-acetylmuramoyl-L-alanine amidase AmiC

Distribution of group_1080 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1080 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1080

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1080.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 amiC 7

Product

# Product Occurence
1 N-acetylmuramoyl-L-alanine amidase AmiC 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0860 7 M Cell wall/membrane/envelope biogenesis (M) N-acetylmuramoyl-L-alanine amidase

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K01448 7 N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] Cationic antimicrobial peptide (CAMP) resistance -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF01520 7 N-acetylmuramoyl-L-alanine amidase
PF11741 7 AMIN domain

Annotations of the 34 SwissProt hits

Annotation Number of occurrences
Endolysin 1
Germination-specific N-acetylmuramoyl-L-alanine amidase 1
N-acetylmuramoyl-L-alanine amidase AmiA 2
N-acetylmuramoyl-L-alanine amidase AmiB 2
N-acetylmuramoyl-L-alanine amidase AmiC 3
N-acetylmuramoyl-L-alanine amidase CwlM 2
N-acetylmuramoyl-L-alanine amidase LytC 1
N-acetylmuramoyl-L-alanine amidase Rv3717 1
Probable N-acetylmuramoyl-L-alanine amidase AmiB 1
Probable cell wall amidase LytH 13
Putative N-acetylmuramoyl-L-alanine amidase 3
Putative N-acetylmuramoyl-L-alanine amidase YrvJ 1
Sporulation-specific N-acetylmuramoyl-L-alanine amidase 1
Uncharacterized cell wall amidase pXO2-42/BXB0045/GBAA_pXO2_0045 1
Uncharacterized protein YqiI 1

Protein length

Min length 416
Max length 420
Mean length (sd) 416.6 (1.5)
Median length 416.0

Protein length distribution