PF08534


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF08534, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 14 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF08534
Description Redoxin

Occurence in the database

PF08534 is associated with 14 different proteins (see tab "Protein list" and "Profile")
The 14 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_997 FBDBKF_05575 123250 123753 1 tpx thiol peroxidase Morganella morganii S1
1 group_1542 FBDBKF_09995 92306 92812 -1 trxA Thiol-disulfide isomerase or thioredoxin Morganella morganii S1
2 group_1542 EHELCC_04795 284271 284777 -1 trxA Thiol-disulfide isomerase or thioredoxin Morganella morganii S2
3 group_997 EHELCC_12015 57741 58244 -1 tpx thiol peroxidase Morganella morganii S2
4 group_1542 NLDBIP_04795 284067 284573 -1 trxA Thiol-disulfide isomerase or thioredoxin Morganella morganii S4
5 group_997 NLDBIP_12355 57696 58199 -1 tpx thiol peroxidase Morganella morganii S4
6 group_997 LHKJJB_12215 57741 58244 -1 tpx thiol peroxidase Morganella morganii S3
7 group_1542 LHKJJB_13835 50805 51311 1 trxA Thiol-disulfide isomerase or thioredoxin Morganella morganii S3
8 group_997 HKOGLL_10830 57741 58244 -1 tpx thiol peroxidase Morganella morganii S5
9 group_1542 HKOGLL_12700 93087 93593 -1 trxA Thiol-disulfide isomerase or thioredoxin Morganella morganii S5
10 group_1542 F4V73_RS00340 78944 79447 1 protein disulfide oxidoreductase Morganella psychrotolerans
11 group_997 F4V73_RS03730 791645 792148 -1 tpx thiol peroxidase Morganella psychrotolerans
12 group_1542 PMI_RS02175 509244 509747 1 protein disulfide oxidoreductase Proteus mirabilis HI4320
13 group_997 PMI_RS06605 1447184 1447687 1 tpx thiol peroxidase Proteus mirabilis HI4320