PF08402
Help to interpret the results
Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF08402, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains
within the database. 21 occurences are identified.
The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.
Description
External link |
PF08402 |
Description |
TOBE domain |
Occurence in the database
PF08402 is associated with 21 different proteins (see tab "Protein list" and "Profile") |
The 21 proteins are classified into 4 different orthogroup(s)
|
# |
Orthogroup |
Locus |
Start |
Stop |
S. |
Gene |
Product |
Organism |
0 |
group_299 |
FBDBKF_07915 |
112516 |
113565 |
-1 |
fbpC |
ferric ABC transporter ATP-binding protein |
Morganella morganii S1 |
1 |
group_1467 |
FBDBKF_09415 |
112351 |
113466 |
-1 |
potA |
spermidine/putrescine ABC transporter ATP-binding protein PotA |
Morganella morganii S1 |
2 |
group_2298 |
FBDBKF_17650 |
26599 |
27627 |
-1 |
potA |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component |
Morganella morganii S1 |
3 |
group_1467 |
EHELCC_09995 |
32638 |
33753 |
1 |
potA |
spermidine/putrescine ABC transporter ATP-binding protein PotA |
Morganella morganii S2 |
4 |
group_299 |
EHELCC_13745 |
86710 |
87759 |
-1 |
fbpC |
ferric ABC transporter ATP-binding protein |
Morganella morganii S2 |
5 |
group_2298 |
EHELCC_18135 |
25975 |
27003 |
-1 |
potA |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component |
Morganella morganii S2 |
6 |
group_1467 |
NLDBIP_10340 |
10909 |
12024 |
1 |
potA |
spermidine/putrescine ABC transporter ATP-binding protein PotA |
Morganella morganii S4 |
7 |
group_299 |
NLDBIP_14190 |
107585 |
108634 |
-1 |
fbpC |
ferric ABC transporter ATP-binding protein |
Morganella morganii S4 |
8 |
group_2298 |
NLDBIP_18015 |
11734 |
12762 |
1 |
potA |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component |
Morganella morganii S4 |
9 |
group_299 |
LHKJJB_08660 |
51115 |
52164 |
1 |
fbpC |
ferric ABC transporter ATP-binding protein |
Morganella morganii S3 |
10 |
group_1467 |
LHKJJB_11015 |
179504 |
180619 |
-1 |
potA |
spermidine/putrescine ABC transporter ATP-binding protein PotA |
Morganella morganii S3 |
11 |
group_2298 |
LHKJJB_18210 |
11734 |
12762 |
1 |
potA |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component |
Morganella morganii S3 |
12 |
group_299 |
HKOGLL_08210 |
51115 |
52164 |
1 |
fbpC |
ferric ABC transporter ATP-binding protein |
Morganella morganii S5 |
13 |
group_1467 |
HKOGLL_14075 |
112805 |
113920 |
-1 |
potA |
spermidine/putrescine ABC transporter ATP-binding protein PotA |
Morganella morganii S5 |
14 |
group_2298 |
HKOGLL_17990 |
25975 |
27003 |
-1 |
potA |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component |
Morganella morganii S5 |
15 |
group_1467 |
F4V73_RS10550 |
241629 |
242744 |
1 |
potA |
spermidine/putrescine ABC transporter ATP-binding protein PotA |
Morganella psychrotolerans |
16 |
group_299 |
F4V73_RS13070 |
229938 |
230987 |
1 |
fbpC |
ferric ABC transporter ATP-binding protein |
Morganella psychrotolerans |
17 |
group_2298 |
F4V73_RS15030 |
245253 |
246281 |
-1 |
|
ABC transporter ATP-binding protein |
Morganella psychrotolerans |
18 |
group_299 |
PMI_RS00905 |
223039 |
224079 |
-1 |
fbpC |
ferric ABC transporter ATP-binding protein |
Proteus mirabilis HI4320 |
19 |
group_1467 |
PMI_RS13490 |
2987846 |
2988961 |
-1 |
potA |
spermidine/putrescine ABC transporter ATP-binding protein PotA |
Proteus mirabilis HI4320 |
20 |
group_230 |
PMI_RS17985 |
3951675 |
3952769 |
-1 |
ugpC |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC |
Proteus mirabilis HI4320 |