Help to interpret the results
Three outputs have been generated:
General: this tab contains the description, occurence in the database and other information related to the selected Pfam domain PF08402
Protein list: lists the 21 occurences of the Pfam domain within the database. The table reports information on each occurence.
Profile: phylogenetic tree annotated with
- the presence of the Pfam domain of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domain has been clustered.
Orthogroups are shown in red if they are annotated with that particular Pfam domain in a given genome , in green otherwise, i.e. if there is a discrepency between orthogroup clustering and Pfam domain prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domain.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domain prediction.
| Orthogroup | Locus | Start | Stop | S. | Gene | Product | Organism | |
|---|---|---|---|---|---|---|---|---|
| 0 | group_199 | FBDBKF_07915 | 112516 | 113565 | -1 | fbpC | ferric ABC transporter ATP-binding protein | Morganella morganii S1 |
| 1 | group_37 | FBDBKF_09415 | 112351 | 113466 | -1 | potA | spermidine/putrescine ABC transporter ATP-binding protein PotA | Morganella morganii S1 |
| 2 | group_37 | FBDBKF_17650 | 26599 | 27627 | -1 | potA | ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component | Morganella morganii S1 |
| 3 | group_37 | EHELCC_09995 | 32638 | 33753 | 1 | potA | spermidine/putrescine ABC transporter ATP-binding protein PotA | Morganella morganii S2 |
| 4 | group_199 | EHELCC_13745 | 86710 | 87759 | -1 | fbpC | ferric ABC transporter ATP-binding protein | Morganella morganii S2 |
| 5 | group_37 | EHELCC_18135 | 25975 | 27003 | -1 | potA | ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component | Morganella morganii S2 |
| 6 | group_37 | NLDBIP_10340 | 10909 | 12024 | 1 | potA | spermidine/putrescine ABC transporter ATP-binding protein PotA | Morganella morganii S4 |
| 7 | group_199 | NLDBIP_14190 | 107585 | 108634 | -1 | fbpC | ferric ABC transporter ATP-binding protein | Morganella morganii S4 |
| 8 | group_37 | NLDBIP_18015 | 11734 | 12762 | 1 | potA | ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component | Morganella morganii S4 |
| 9 | group_199 | LHKJJB_08660 | 51115 | 52164 | 1 | fbpC | ferric ABC transporter ATP-binding protein | Morganella morganii S3 |
| 10 | group_37 | LHKJJB_11015 | 179504 | 180619 | -1 | potA | spermidine/putrescine ABC transporter ATP-binding protein PotA | Morganella morganii S3 |
| 11 | group_37 | LHKJJB_18210 | 11734 | 12762 | 1 | potA | ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component | Morganella morganii S3 |
| 12 | group_199 | HKOGLL_08210 | 51115 | 52164 | 1 | fbpC | ferric ABC transporter ATP-binding protein | Morganella morganii S5 |
| 13 | group_37 | HKOGLL_14075 | 112805 | 113920 | -1 | potA | spermidine/putrescine ABC transporter ATP-binding protein PotA | Morganella morganii S5 |
| 14 | group_37 | HKOGLL_17990 | 25975 | 27003 | -1 | potA | ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component | Morganella morganii S5 |
| 15 | group_37 | F4V73_RS10550 | 241629 | 242744 | 1 | potA | spermidine/putrescine ABC transporter ATP-binding protein PotA | Morganella psychrotolerans |
| 16 | group_199 | F4V73_RS13070 | 229938 | 230987 | 1 | fbpC | ferric ABC transporter ATP-binding protein | Morganella psychrotolerans |
| 17 | group_37 | F4V73_RS15030 | 245253 | 246281 | -1 | ABC transporter ATP-binding protein | Morganella psychrotolerans | |
| 18 | group_199 | PMI_RS00905 | 223039 | 224079 | -1 | fbpC | ferric ABC transporter ATP-binding protein | Proteus mirabilis HI4320 |
| 19 | group_37 | PMI_RS13490 | 2987846 | 2988961 | -1 | potA | spermidine/putrescine ABC transporter ATP-binding protein PotA | Proteus mirabilis HI4320 |
| 20 | group_199 | PMI_RS17985 | 3951675 | 3952769 | -1 | ugpC | sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC | Proteus mirabilis HI4320 |
