PF07825


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF07825, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 8 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF07825
Description Excisionase-like protein

Occurence in the database

PF07825 is associated with 8 different proteins (see tab "Protein list" and "Profile")
The 8 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_3069 FBDBKF_18745 27265 27516 1 Excisionase Morganella morganii S1
1 group_3069 EHELCC_15320 27265 27516 1 Excisionase Morganella morganii S2
2 group_3069 NLDBIP_15850 27265 27516 1 Excisionase Morganella morganii S4
3 group_3069 LHKJJB_15990 89170 89421 -1 Excisionase Morganella morganii S3
4 group_3069 HKOGLL_15110 88382 88633 -1 Excisionase Morganella morganii S5
5 group_3877 PMI_RS02290 528035 528280 -1 excisionase Proteus mirabilis HI4320
6 group_3069 PMI_RS04390 985446 985697 -1 excisionase Proteus mirabilis HI4320
7 group_3877 PMI_RS04660 1030446 1030688 -1 excisionase Proteus mirabilis HI4320