Orthogroup:group_2375


Homologs in group_2375

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_19125 FBDBKF_19125 Morganella morganii S1 rpsD 30S ribosomal protein S4
EHELCC_18870 EHELCC_18870 Morganella morganii S2 rpsD 30S ribosomal protein S4
NLDBIP_18885 NLDBIP_18885 Morganella morganii S4 rpsD 30S ribosomal protein S4
LHKJJB_18740 LHKJJB_18740 Morganella morganii S3 rpsD 30S ribosomal protein S4
HKOGLL_18475 HKOGLL_18475 Morganella morganii S5 rpsD 30S ribosomal protein S4
F4V73_RS19040 F4V73_RS19040 Morganella psychrotolerans rpsD 30S ribosomal protein S4
PMI_RS16265 PMI_RS16265 Proteus mirabilis HI4320 rpsD 30S ribosomal protein S4

Distribution of group_2375 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_2375 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_2375

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_2375.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 rpsD 7

Product

# Product Occurence
1 30S ribosomal protein S4 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0522 7 J Translation, ribosomal structure and biogenesis (J) Ribosomal protein S4 or related protein

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K02986 7 small subunit ribosomal protein S4 Ribosome -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00163 7 Ribosomal protein S4/S9 N-terminal domain
PF01479 7 S4 domain

Annotations of the 511 SwissProt hits

Annotation Number of occurrences
Small ribosomal subunit protein uS4 494
Small ribosomal subunit protein uS4A 15
Small ribosomal subunit protein uS4B 2

Protein length

Unique protein length 206

Protein length distribution