PF05947


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF05947, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 18 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF05947
Description Type VI secretion system, TssF

Occurence in the database

PF05947 is associated with 18 different proteins (see tab "Protein list" and "Profile")
The 18 proteins are classified into 3 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_547 FBDBKF_01305 251577 253358 1 tssF type VI secretion system baseplate subunit TssF Morganella morganii S1
1 group_554 FBDBKF_01370 269381 271114 1 impG Type VI secretion system protein ImpG Morganella morganii S1
2 group_554 EHELCC_00175 37754 39487 -1 impG Type VI secretion system protein ImpG Morganella morganii S2
3 group_547 EHELCC_00240 55510 57291 -1 tssF type VI secretion system baseplate subunit TssF Morganella morganii S2
4 group_547 NLDBIP_03220 622845 624626 1 tssF type VI secretion system baseplate subunit TssF Morganella morganii S4
5 group_554 NLDBIP_03285 640649 642382 1 impG Type VI secretion system protein ImpG Morganella morganii S4
6 group_547 LHKJJB_04735 230086 231867 1 tssF type VI secretion system baseplate subunit TssF Morganella morganii S3
7 group_554 LHKJJB_04800 247890 249623 1 impG Type VI secretion system protein ImpG Morganella morganii S3
8 group_554 HKOGLL_02245 37959 39692 -1 impG Type VI secretion system protein ImpG Morganella morganii S5
9 group_547 HKOGLL_02310 55715 57496 -1 tssF type VI secretion system baseplate subunit TssF Morganella morganii S5
10 group_3685 F4V73_RS00075 19566 21413 -1 tssF type VI secretion system baseplate subunit TssF Morganella psychrotolerans
11 group_554 F4V73_RS02305 485387 487120 -1 type VI secretion system baseplate subunit TssF Morganella psychrotolerans
12 group_547 F4V73_RS02365 502660 504441 -1 tssF type VI secretion system baseplate subunit TssF Morganella psychrotolerans
13 group_3685 F4V73_RS07005 1454424 1456172 -1 type VI secretion system baseplate subunit TssF Morganella psychrotolerans
14 group_3685 F4V73_RS09395 1980198 1982075 1 tssF type VI secretion system baseplate subunit TssF Morganella psychrotolerans
15 group_3685 F4V73_RS16745 170962 172725 -1 tssF type VI secretion system baseplate subunit TssF Morganella psychrotolerans
16 group_554 PMI_RS03610 808353 810089 -1 type VI secretion system baseplate subunit TssF Proteus mirabilis HI4320
17 group_547 PMI_RS03670 825594 827369 -1 tssF type VI secretion system baseplate subunit TssF Proteus mirabilis HI4320