PF05947
Help to interpret the results
Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF05947, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains
within the database. 18 occurences are identified.
The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.
Description
External link |
PF05947 |
Description |
Type VI secretion system, TssF |
Occurence in the database
PF05947 is associated with 18 different proteins (see tab "Protein list" and "Profile") |
The 18 proteins are classified into 3 different orthogroup(s)
|
# |
Orthogroup |
Locus |
Start |
Stop |
S. |
Gene |
Product |
Organism |
0 |
group_547 |
FBDBKF_01305 |
251577 |
253358 |
1 |
tssF |
type VI secretion system baseplate subunit TssF |
Morganella morganii S1 |
1 |
group_554 |
FBDBKF_01370 |
269381 |
271114 |
1 |
impG |
Type VI secretion system protein ImpG |
Morganella morganii S1 |
2 |
group_554 |
EHELCC_00175 |
37754 |
39487 |
-1 |
impG |
Type VI secretion system protein ImpG |
Morganella morganii S2 |
3 |
group_547 |
EHELCC_00240 |
55510 |
57291 |
-1 |
tssF |
type VI secretion system baseplate subunit TssF |
Morganella morganii S2 |
4 |
group_547 |
NLDBIP_03220 |
622845 |
624626 |
1 |
tssF |
type VI secretion system baseplate subunit TssF |
Morganella morganii S4 |
5 |
group_554 |
NLDBIP_03285 |
640649 |
642382 |
1 |
impG |
Type VI secretion system protein ImpG |
Morganella morganii S4 |
6 |
group_547 |
LHKJJB_04735 |
230086 |
231867 |
1 |
tssF |
type VI secretion system baseplate subunit TssF |
Morganella morganii S3 |
7 |
group_554 |
LHKJJB_04800 |
247890 |
249623 |
1 |
impG |
Type VI secretion system protein ImpG |
Morganella morganii S3 |
8 |
group_554 |
HKOGLL_02245 |
37959 |
39692 |
-1 |
impG |
Type VI secretion system protein ImpG |
Morganella morganii S5 |
9 |
group_547 |
HKOGLL_02310 |
55715 |
57496 |
-1 |
tssF |
type VI secretion system baseplate subunit TssF |
Morganella morganii S5 |
10 |
group_3685 |
F4V73_RS00075 |
19566 |
21413 |
-1 |
tssF |
type VI secretion system baseplate subunit TssF |
Morganella psychrotolerans |
11 |
group_554 |
F4V73_RS02305 |
485387 |
487120 |
-1 |
|
type VI secretion system baseplate subunit TssF |
Morganella psychrotolerans |
12 |
group_547 |
F4V73_RS02365 |
502660 |
504441 |
-1 |
tssF |
type VI secretion system baseplate subunit TssF |
Morganella psychrotolerans |
13 |
group_3685 |
F4V73_RS07005 |
1454424 |
1456172 |
-1 |
|
type VI secretion system baseplate subunit TssF |
Morganella psychrotolerans |
14 |
group_3685 |
F4V73_RS09395 |
1980198 |
1982075 |
1 |
tssF |
type VI secretion system baseplate subunit TssF |
Morganella psychrotolerans |
15 |
group_3685 |
F4V73_RS16745 |
170962 |
172725 |
-1 |
tssF |
type VI secretion system baseplate subunit TssF |
Morganella psychrotolerans |
16 |
group_554 |
PMI_RS03610 |
808353 |
810089 |
-1 |
|
type VI secretion system baseplate subunit TssF |
Proteus mirabilis HI4320 |
17 |
group_547 |
PMI_RS03670 |
825594 |
827369 |
-1 |
tssF |
type VI secretion system baseplate subunit TssF |
Proteus mirabilis HI4320 |