Homologs in group_109

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10 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_01305 FBDBKF_01305 22.3 Morganella morganii S1 tssF type VI secretion system baseplate subunit TssF
EHELCC_00240 EHELCC_00240 22.3 Morganella morganii S2 tssF type VI secretion system baseplate subunit TssF
NLDBIP_03220 NLDBIP_03220 22.3 Morganella morganii S4 tssF type VI secretion system baseplate subunit TssF
LHKJJB_04735 LHKJJB_04735 22.3 Morganella morganii S3 tssF type VI secretion system baseplate subunit TssF
HKOGLL_02310 HKOGLL_02310 22.3 Morganella morganii S5 tssF type VI secretion system baseplate subunit TssF
F4V73_RS00075 F4V73_RS00075 21.7 Morganella psychrotolerans tssF type VI secretion system baseplate subunit TssF
F4V73_RS02365 F4V73_RS02365 21.3 Morganella psychrotolerans tssF type VI secretion system baseplate subunit TssF
F4V73_RS09395 F4V73_RS09395 19.5 Morganella psychrotolerans tssF type VI secretion system baseplate subunit TssF
F4V73_RS16745 F4V73_RS16745 22.9 Morganella psychrotolerans tssF type VI secretion system baseplate subunit TssF
PMI_RS03670 PMI_RS03670 20.9 Proteus mirabilis HI4320 tssF type VI secretion system baseplate subunit TssF

Distribution of the homologs in the orthogroup group_109

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_109

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q9I744 3.17e-15 82 24 22 609 1 tssF1 Type VI secretion system component TssF1 Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS07005
Feature type CDS
Gene -
Product type VI secretion system baseplate subunit TssF
Location 1454424 - 1456172 (strand: -1)
Length 1749 (nucleotides) / 582 (amino acids)
In genomic island -

Contig

Accession NZ_VXKB01000001
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_109
Orthogroup size 11
N. genomes 7

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Genomic region

Domains

PF05947 Type VI secretion system, TssF

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3519 Intracellular trafficking, secretion, and vesicular transport (U) U Type VI protein secretion system component VasA

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K11896 type VI secretion system protein ImpG - -

Protein Sequence

MRNTTLHYFEQQRRLLQEGLAEFTRLHPHQAQLLGIGYREITDPQLRALIDGVAFLNGLTAQRLDRIAPALTETLIRMAFPDYLRPVPALMPVIFTPQPEAMQATELPADTPFSTQSHTGETLYWRTQAPLTLLPLALTAQQFIARDTAYRENGHMYSASCSLLLTLSVTAPGVTLAALPLSSLTLNFTGEGEAPWQADDTVHRLCAGIRLTAGETVLFLPAHICHRLPLSHSAETGDTVSALLYHALWRPERHTGVMLQLGDVLTHCRERTFSLEFLFRELPPDPAVFDQNSTITLFSAVLTNCFPHQTEPLRITRDTNPHRICTDTHADFILHSVEEVTDISTLPSATVAQLYHETAGIPSRWYWQAVCADDGAVTHLNAIRSEPRTDGETETSGLWVLRTRVTQGAAATRCAVTSAVNSLRAEPLAYRASATQRPLLTPLISQPDPDALFMHHRHTRLSDLIRSPQGAAPLKALLTLYDRQSAPVLSRLIAAIDDVTSSTGVTVRFYQNTPLTLTGQHITVTLSQSAPVAGTAFFAALLEAVFIVLSDDDEFIQLTLRWQENVREAHHCPLRLSAEMNG

Flanking regions ( +/- flanking 50bp)

GGCGTGCCTGGATTTTAATACCGGGCAGATGATAAGCAGCGGGGACAGTCATGCGTAATACGACACTGCACTATTTTGAACAACAGCGGCGTCTGTTACAGGAAGGGCTGGCTGAATTTACCCGGCTGCATCCGCATCAGGCGCAATTACTGGGGATCGGATACCGGGAAATCACAGATCCGCAATTGCGTGCGCTGATTGACGGCGTGGCATTTCTCAACGGGCTAACCGCACAACGGCTGGATCGTATTGCGCCGGCGCTGACGGAAACGCTGATCCGCATGGCATTTCCTGATTATTTACGCCCGGTTCCGGCACTGATGCCGGTGATATTCACGCCGCAACCGGAAGCGATGCAGGCAACAGAACTCCCGGCGGATACGCCGTTCAGTACTCAGAGTCACACAGGGGAAACGCTGTACTGGCGGACACAGGCGCCGCTGACACTTCTGCCGCTGGCACTGACGGCACAGCAATTTATTGCGCGGGACACGGCGTACCGGGAAAACGGACACATGTACAGTGCGTCCTGTTCGCTTCTCCTGACACTGTCGGTGACCGCACCCGGCGTGACACTGGCGGCGCTGCCGCTCTCTTCACTGACGCTGAATTTTACCGGAGAAGGTGAAGCGCCGTGGCAGGCAGATGACACTGTTCACCGCCTGTGTGCGGGGATCCGCCTGACCGCCGGGGAAACCGTCCTTTTTTTACCGGCACATATTTGTCACCGTCTGCCCCTGAGCCACAGCGCAGAGACAGGCGATACGGTCAGTGCACTGCTGTATCATGCATTGTGGCGCCCGGAGCGCCACACCGGGGTGATGCTGCAACTTGGTGATGTCCTTACTCACTGCCGTGAACGGACATTCAGCCTGGAATTTCTGTTCCGTGAACTGCCGCCTGATCCGGCGGTATTTGATCAGAACAGTACGATCACACTGTTCAGTGCGGTACTGACAAATTGTTTCCCCCATCAGACTGAGCCGCTGCGCATTACCCGGGATACCAATCCGCACCGGATCTGCACAGACACACACGCGGATTTCATTCTGCATTCTGTGGAAGAAGTGACGGATATCAGCACGCTGCCGTCTGCCACGGTCGCGCAGTTGTATCATGAAACCGCAGGTATTCCCTCCCGCTGGTACTGGCAGGCGGTGTGTGCAGATGATGGCGCGGTAACTCATCTTAATGCCATACGGTCTGAGCCGCGGACAGACGGCGAAACAGAAACATCCGGACTTTGGGTGCTGCGCACAAGGGTAACTCAGGGCGCGGCAGCCACCCGTTGCGCGGTAACGTCGGCGGTAAATTCCCTGCGGGCAGAGCCGCTGGCGTACCGCGCGTCGGCAACGCAGCGCCCGTTACTCACCCCGCTGATATCGCAACCGGACCCGGACGCGCTCTTTATGCATCACCGGCACACGCGGTTGTCTGATCTTATCCGCAGCCCGCAGGGCGCGGCACCACTGAAAGCCTTACTTACTCTGTATGACAGACAATCCGCACCGGTGCTTTCCCGCCTGATAGCGGCAATTGACGATGTCACTTCCTCGACCGGGGTTACTGTCCGTTTTTATCAGAACACCCCGCTGACTCTCACCGGACAGCATATTACGGTCACACTTTCACAAAGCGCCCCGGTTGCGGGAACGGCATTTTTTGCCGCATTGCTGGAAGCGGTTTTTATTGTGCTGAGTGATGATGATGAATTTATACAACTGACATTGCGCTGGCAGGAAAATGTGCGTGAAGCACATCACTGCCCGCTGAGATTGTCTGCTGAGATGAACGGATGAAGCGGCGTAATCCCCCCGGGCTGCTCGGCTCTGATGGTGTATTGCCCCGC