Orthogroup:group_109


Homologs in group_109

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11 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_01305 FBDBKF_01305 Morganella morganii S1 tssF type VI secretion system baseplate subunit TssF
EHELCC_00240 EHELCC_00240 Morganella morganii S2 tssF type VI secretion system baseplate subunit TssF
NLDBIP_03220 NLDBIP_03220 Morganella morganii S4 tssF type VI secretion system baseplate subunit TssF
LHKJJB_04735 LHKJJB_04735 Morganella morganii S3 tssF type VI secretion system baseplate subunit TssF
HKOGLL_02310 HKOGLL_02310 Morganella morganii S5 tssF type VI secretion system baseplate subunit TssF
F4V73_RS00075 F4V73_RS00075 Morganella psychrotolerans tssF type VI secretion system baseplate subunit TssF
F4V73_RS02365 F4V73_RS02365 Morganella psychrotolerans tssF type VI secretion system baseplate subunit TssF
F4V73_RS07005 F4V73_RS07005 Morganella psychrotolerans - type VI secretion system baseplate subunit TssF
F4V73_RS09395 F4V73_RS09395 Morganella psychrotolerans tssF type VI secretion system baseplate subunit TssF
F4V73_RS16745 F4V73_RS16745 Morganella psychrotolerans tssF type VI secretion system baseplate subunit TssF
PMI_RS03670 PMI_RS03670 Proteus mirabilis HI4320 tssF type VI secretion system baseplate subunit TssF

Distribution of group_109 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_109 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_109

Orthogroup content: 11 members

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This page summarizes the annotation of all members of the orthologous group group_109.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 tssF 10
2 - 1

Product

# Product Occurence
1 type VI secretion system baseplate subunit TssF 11

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG3519 11 U Intracellular trafficking, secretion, and vesicular transport (U) Type VI protein secretion system component VasA

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K11896 11 type VI secretion system protein ImpG - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF05947 11 Type VI secretion system, TssF

Virulence factor Annotation(s)

VF gene ID Occurences Protein VF ID Category
VFG035273 1 type VI secretion system baseplate subunit TssF VF1120 Effector delivery system
VFG041076 1 type VI secretion system baseplate subunit TssF VF1036 Effector delivery system
VFG041206 1 type VI secretion system baseplate subunit TssF VF1263 Effector delivery system

Annotations of the 1 SwissProt hits

Annotation Number of occurrences
Type VI secretion system component TssF1 1

Protein length

Min length 582
Max length 625
Mean length (sd) 596.2 (12.5)
Median length 593.0

Protein length distribution