Homologs in group_554

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_01370 FBDBKF_01370 75.9 Morganella morganii S1 impG Type VI secretion system protein ImpG
EHELCC_00175 EHELCC_00175 75.9 Morganella morganii S2 impG Type VI secretion system protein ImpG
NLDBIP_03285 NLDBIP_03285 75.9 Morganella morganii S4 impG Type VI secretion system protein ImpG
LHKJJB_04800 LHKJJB_04800 75.9 Morganella morganii S3 impG Type VI secretion system protein ImpG
HKOGLL_02245 HKOGLL_02245 75.9 Morganella morganii S5 impG Type VI secretion system protein ImpG
PMI_RS03610 PMI_RS03610 48.4 Proteus mirabilis HI4320 - type VI secretion system baseplate subunit TssF

Distribution of the homologs in the orthogroup group_554

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_554

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q9I744 4.24e-06 53 30 4 131 1 tssF1 Type VI secretion system component TssF1 Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS02305
Feature type CDS
Gene -
Product type VI secretion system baseplate subunit TssF
Location 485387 - 487120 (strand: -1)
Length 1734 (nucleotides) / 577 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_554
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF05947 Type VI secretion system, TssF

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3519 Intracellular trafficking, secretion, and vesicular transport (U) U Type VI protein secretion system component VasA

Protein Sequence

MSEFKFLQEKHYLQQLSREFVKEYPHLADVLDPHDEQSGSLLEGFAFLSARLQEKVDDAFPEITLPLLQRLQSRAIKGIPATAIVQFDSGGKIDFPLDIPAGTVIKGNEGEIFSTCNNTTLQPYTLIGRYVTHHPSKTCLSLEFKYRGNKEEHATAPFSLFLDKSVSSANTLLLWFCQYFGHIELEHNNTRYHGDETRFNFIPQVGQNNTVLYHPENKPNWPQKLLEGLYIDHVHHFIDIDIPVIVPTLEWEESDSFLLHIYFNKQLPLHNDVLSGSFNLNCIAVVNEEEQKEIILDFQENESVYYLPVEGTHFITTLENIQLAFEPHDEQRGIVANFYPVTHLTPSSRLLPKYKDAWFYALSIDKTITGKNNYYIHFYNSQGEVITTPPGPHFRCCYRCIINNPQSNPGDICHLSPLLPDLLTAKNITACTPCYPPITDNKYYWNLLSHYSANGFMLSSVESVKQMVSDYILYQENDRQRCKQINQRLEGLTDINTALEDRLMKGKPYRCLSLTMTLNPEKFDNHGDAFMFVMHLYHFFPFCLSENMLLKMNVKFTDSDNTWYLSPYLLRGYKSLI

Flanking regions ( +/- flanking 50bp)

TGTTGGGAAGAAAGTACACATTAAACACCGGGTGCAGGGTAACAGTACAGATGAGTGAATTTAAATTTTTACAGGAAAAACATTACCTTCAGCAACTCAGTCGTGAGTTTGTCAAAGAATATCCGCACCTGGCCGATGTACTTGACCCGCATGACGAACAGAGCGGCAGTTTACTTGAAGGATTTGCGTTTCTCAGTGCCCGTCTTCAGGAAAAAGTGGATGACGCTTTTCCTGAAATTACCCTGCCTCTTTTACAGCGCCTGCAATCCAGAGCAATCAAAGGTATTCCCGCAACCGCAATTGTACAGTTTGACAGCGGAGGAAAAATTGATTTTCCGTTGGATATTCCGGCCGGAACAGTAATCAAAGGGAACGAGGGTGAGATTTTCTCAACCTGTAATAATACGACATTACAGCCCTACACTCTCATTGGTCGCTATGTAACACACCATCCGTCCAAAACATGTTTGTCACTGGAATTTAAGTACAGAGGAAACAAAGAGGAGCATGCGACCGCCCCTTTCTCTTTATTTCTGGATAAATCCGTTTCATCTGCTAACACATTACTGTTATGGTTTTGCCAGTATTTCGGACATATCGAATTAGAGCACAATAATACACGTTACCACGGTGATGAAACCCGGTTTAATTTCATTCCTCAGGTAGGACAGAACAATACTGTTTTATATCACCCGGAAAACAAACCTAACTGGCCACAAAAACTGCTGGAAGGGTTATATATTGACCATGTTCATCATTTTATTGACATCGACATTCCGGTAATTGTACCAACCCTGGAATGGGAAGAATCAGATTCCTTTTTATTGCATATCTATTTCAACAAACAACTTCCGTTGCATAATGATGTATTATCAGGGAGTTTTAACCTTAACTGTATTGCTGTTGTTAATGAAGAAGAGCAAAAAGAAATTATTTTAGATTTTCAGGAAAATGAATCTGTTTACTATTTACCGGTAGAGGGCACTCATTTTATTACGACACTTGAAAATATTCAGCTGGCTTTTGAGCCACATGATGAACAACGGGGCATAGTCGCTAATTTTTATCCTGTTACTCATCTCACGCCATCATCGCGGCTGCTGCCAAAATATAAAGACGCCTGGTTTTATGCGCTCAGTATTGATAAAACGATCACCGGAAAAAATAATTATTATATACATTTTTATAATAGTCAGGGTGAAGTAATAACGACCCCGCCCGGACCTCATTTCCGGTGTTGTTACCGTTGTATCATTAATAACCCACAGAGTAATCCCGGTGATATCTGTCATTTAAGCCCGTTACTGCCTGATCTGCTTACAGCAAAAAATATTACAGCATGCACACCCTGCTATCCCCCGATAACGGATAACAAATACTATTGGAATCTGTTATCTCATTACAGTGCGAATGGGTTTATGCTTTCTTCTGTTGAATCTGTTAAGCAAATGGTCAGCGACTATATTTTATATCAAGAGAATGACCGCCAGCGCTGCAAACAAATTAATCAGCGTCTGGAAGGATTAACCGATATTAATACAGCCCTTGAGGATCGCCTGATGAAAGGCAAGCCCTATCGCTGTCTTTCTCTGACGATGACATTAAATCCGGAAAAATTTGATAACCACGGTGATGCTTTTATGTTTGTAATGCATTTATATCACTTTTTCCCGTTTTGTCTTTCAGAAAATATGCTGCTGAAAATGAATGTTAAATTTACCGACAGTGACAATACATGGTACCTGTCTCCATATTTACTTCGTGGATATAAATCGTTGATTTAAATTGATGGAGAGGGGATCGCAGACAGATGATCAGGGCTACTTCAGCAGCC