PF05591


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF05591, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 11 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF05591
Description Type VI secretion system, VipA, VC_A0107 or Hcp2

Occurence in the database

PF05591 is associated with 11 different proteins (see tab "Protein list" and "Profile")
The 11 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_544 FBDBKF_01290 249130 249627 1 tssB type VI secretion system contractile sheath small subunit Morganella morganii S1
1 group_544 EHELCC_00255 59241 59738 -1 tssB type VI secretion system contractile sheath small subunit Morganella morganii S2
2 group_544 NLDBIP_03205 620398 620895 1 tssB type VI secretion system contractile sheath small subunit Morganella morganii S4
3 group_544 LHKJJB_04720 227639 228136 1 tssB type VI secretion system contractile sheath small subunit Morganella morganii S3
4 group_544 HKOGLL_02325 59446 59943 -1 tssB type VI secretion system contractile sheath small subunit Morganella morganii S5
5 group_3686 F4V73_RS00095 24172 24729 -1 tssB type VI secretion system contractile sheath small subunit Morganella psychrotolerans
6 group_544 F4V73_RS02380 506391 506888 -1 tssB type VI secretion system contractile sheath small subunit Morganella psychrotolerans
7 group_3686 F4V73_RS07025 1459440 1459949 -1 tssB type VI secretion system contractile sheath small subunit Morganella psychrotolerans
8 group_3686 F4V73_RS09365 1971009 1971542 -1 tssB type VI secretion system contractile sheath small subunit Morganella psychrotolerans
9 group_3686 F4V73_RS16870 203351 203848 -1 tssB type VI secretion system contractile sheath small subunit Morganella psychrotolerans
10 group_544 PMI_RS03685 829313 829813 -1 tssB type VI secretion system contractile sheath small subunit Proteus mirabilis HI4320