PF05175
Help to interpret the results
Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF05175, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains
within the database. 22 occurences are identified.
The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.
Description
External link |
PF05175 |
Description |
Methyltransferase small domain |
Occurence in the database
PF05175 is associated with 22 different proteins (see tab "Protein list" and "Profile") |
The 22 proteins are classified into 4 different orthogroup(s)
|
# |
Orthogroup |
Locus |
Start |
Stop |
S. |
Gene |
Product |
Organism |
0 |
group_566 |
FBDBKF_01465 |
291600 |
292343 |
-1 |
trmN6 |
tRNA1(Val) A37 N6-methylase TrmN6 |
Morganella morganii S1 |
1 |
group_1928 |
FBDBKF_14345 |
68896 |
69825 |
-1 |
prmB |
50S ribosomal protein L3 N(5)-glutamine methyltransferase |
Morganella morganii S1 |
2 |
group_2319 |
FBDBKF_17810 |
23506 |
24519 |
1 |
rsmC |
16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC |
Morganella morganii S1 |
3 |
group_566 |
EHELCC_00080 |
16525 |
17268 |
1 |
trmN6 |
tRNA1(Val) A37 N6-methylase TrmN6 |
Morganella morganii S2 |
4 |
group_1928 |
EHELCC_07935 |
47160 |
48089 |
1 |
prmB |
50S ribosomal protein L3 N(5)-glutamine methyltransferase |
Morganella morganii S2 |
5 |
group_2319 |
EHELCC_09835 |
202938 |
203951 |
1 |
rsmC |
16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC |
Morganella morganii S2 |
6 |
group_566 |
NLDBIP_03380 |
662868 |
663611 |
-1 |
trmN6 |
tRNA1(Val) A37 N6-methylase TrmN6 |
Morganella morganii S4 |
7 |
group_1928 |
NLDBIP_08260 |
47160 |
48089 |
1 |
prmB |
50S ribosomal protein L3 N(5)-glutamine methyltransferase |
Morganella morganii S4 |
8 |
group_2319 |
NLDBIP_10215 |
202938 |
203951 |
1 |
rsmC |
16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC |
Morganella morganii S4 |
9 |
group_566 |
LHKJJB_04895 |
270109 |
270852 |
-1 |
trmN6 |
tRNA1(Val) A37 N6-methylase TrmN6 |
Morganella morganii S3 |
10 |
group_1928 |
LHKJJB_06005 |
209070 |
209999 |
-1 |
prmB |
50S ribosomal protein L3 N(5)-glutamine methyltransferase |
Morganella morganii S3 |
11 |
group_2319 |
LHKJJB_07540 |
13287 |
14300 |
-1 |
rsmC |
16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC |
Morganella morganii S3 |
12 |
group_566 |
HKOGLL_02150 |
16730 |
17473 |
1 |
trmN6 |
tRNA1(Val) A37 N6-methylase TrmN6 |
Morganella morganii S5 |
13 |
group_1928 |
HKOGLL_04910 |
31751 |
32680 |
1 |
prmB |
50S ribosomal protein L3 N(5)-glutamine methyltransferase |
Morganella morganii S5 |
14 |
group_2319 |
HKOGLL_07090 |
13287 |
14300 |
-1 |
rsmC |
16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC |
Morganella morganii S5 |
15 |
group_566 |
F4V73_RS01940 |
424306 |
425049 |
1 |
|
tRNA1(Val) (adenine(37)-N6)-methyltransferase |
Morganella psychrotolerans |
16 |
group_1928 |
F4V73_RS02560 |
540766 |
541695 |
1 |
prmB |
50S ribosomal protein L3 N(5)-glutamine methyltransferase |
Morganella psychrotolerans |
17 |
group_612 |
F4V73_RS04275 |
903780 |
904616 |
1 |
prmC |
peptide chain release factor N(5)-glutamine methyltransferase |
Morganella psychrotolerans |
18 |
group_2319 |
F4V73_RS15155 |
10675 |
11688 |
-1 |
rsmC |
16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC |
Morganella psychrotolerans |
19 |
group_1928 |
PMI_RS08840 |
1933105 |
1934037 |
-1 |
prmB |
50S ribosomal protein L3 N(5)-glutamine methyltransferase |
Proteus mirabilis HI4320 |
20 |
group_566 |
PMI_RS09355 |
2041495 |
2042253 |
-1 |
|
tRNA1(Val) (adenine(37)-N6)-methyltransferase |
Proteus mirabilis HI4320 |
21 |
group_2319 |
PMI_RS12335 |
2733887 |
2734900 |
1 |
rsmC |
16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC |
Proteus mirabilis HI4320 |