Orthogroup:group_640


Homologs in group_640

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_02090 FBDBKF_02090 Morganella morganii S1 mepM murein DD-endopeptidase MepM
EHELCC_02560 EHELCC_02560 Morganella morganii S2 mepM murein DD-endopeptidase MepM
NLDBIP_00900 NLDBIP_00900 Morganella morganii S4 mepM murein DD-endopeptidase MepM
LHKJJB_01135 LHKJJB_01135 Morganella morganii S3 mepM murein DD-endopeptidase MepM
HKOGLL_01175 HKOGLL_01175 Morganella morganii S5 mepM murein DD-endopeptidase MepM
F4V73_RS04455 F4V73_RS04455 Morganella psychrotolerans mepM murein DD-endopeptidase MepM
PMI_RS05565 PMI_RS05565 Proteus mirabilis HI4320 mepM murein DD-endopeptidase MepM

Distribution of group_640 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_640 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_640

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_640.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 mepM 7

Product

# Product Occurence
1 murein DD-endopeptidase MepM 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0739 6 M Cell wall/membrane/envelope biogenesis (M) Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain
COG3061 1 D Cell cycle control, cell division, chromosome partitioning (D) Cell division protein YtfB/OapA (opacity-associated protein A)

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K19304 7 murein DD-endopeptidase [EC:3.4.24.-] - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF01476 7 LysM domain
PF01551 7 Peptidase family M23
PF08525 7 Opacity-associated protein A N-terminal motif
PF19425 7 Csd3 second domain

Annotations of the 34 SwissProt hits

Annotation Number of occurrences
Cell division protein DipM 1
Glycyl-glycine endopeptidase ALE-1 1
Glycyl-glycine endopeptidase LytM 8
Lipoprotein NlpD (Fragment) 1
Lipoprotein NlpD/LppB homolog 1
Lysostaphin 2
Murein DD-endopeptidase MepM 3
Murein hydrolase activator EnvC 1
Murein hydrolase activator NlpD 5
Outer membrane antigenic lipoprotein B 1
Outer membrane antigenic lipoprotein B (Fragment) 1
Probable tape measure protein 1
Protein NlpD/LppB homolog 1
SPbeta prophage-derived uncharacterized transglycosylase YomI 1
Stage II sporulation protein Q 1
Uncharacterized lipoprotein YgeR 1
Uncharacterized metalloprotease BUsg_310 1
Uncharacterized metalloprotease HI_0409 1
Uncharacterized metalloprotease bbp_296 1
Uncharacterized protein HI_0756 1

Protein length

Min length 442
Max length 460
Mean length (sd) 456.3 (7.0)
Median length 460.0

Protein length distribution