PF03734

Help to interpret the results

Three outputs have been generated:
General: this tab contains the description, occurence in the database and other information related to the selected Pfam domain PF03734
Protein list: lists the 21 occurences of the Pfam domain within the database. The table reports information on each occurence.
Profile: phylogenetic tree annotated with
- the presence of the Pfam domain of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domain has been clustered.
Orthogroups are shown in red if they are annotated with that particular Pfam domain in a given genome , in green otherwise, i.e. if there is a discrepency between orthogroup clustering and Pfam domain prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domain.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domain prediction.

Description

External link PF03734
Description L,D-transpeptidase catalytic domain

Occurence in the database

PF03734 is associated with 21 different proteins
The 21 proteins are classified into 3 different orthogroup(s)
Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1097 FBDBKF_05800 162514 163596 -1 erfK Lipoprotein-anchoring transpeptidase ErfK/SrfK Morganella morganii S1
1 group_1302 FBDBKF_07235 123932 125665 1 ldtD L,D-transpeptidase Morganella morganii S1
2 group_2052 FBDBKF_15125 35560 36288 -1 yafK Murein L,D-transpeptidase YafK Morganella morganii S1
3 group_1302 EHELCC_03735 60521 62254 -1 ldtD L,D-transpeptidase Morganella morganii S2
4 group_2052 EHELCC_11120 48618 49346 1 yafK Murein L,D-transpeptidase YafK Morganella morganii S2
5 group_1097 EHELCC_11790 17898 18980 1 erfK Lipoprotein-anchoring transpeptidase ErfK/SrfK Morganella morganii S2
6 group_1302 NLDBIP_03735 60317 62050 -1 ldtD L,D-transpeptidase Morganella morganii S4
7 group_2052 NLDBIP_11465 48618 49346 1 yafK Murein L,D-transpeptidase YafK Morganella morganii S4
8 group_1097 NLDBIP_12130 17853 18935 1 erfK Lipoprotein-anchoring transpeptidase ErfK/SrfK Morganella morganii S4
9 group_1302 LHKJJB_09565 60431 62164 -1 ldtD L,D-transpeptidase Morganella morganii S3
10 group_2052 LHKJJB_11325 48618 49346 1 yafK Murein L,D-transpeptidase YafK Morganella morganii S3
11 group_1097 LHKJJB_11990 17898 18980 1 erfK Lipoprotein-anchoring transpeptidase ErfK/SrfK Morganella morganii S3
12 group_1302 HKOGLL_09410 128888 130621 1 ldtD L,D-transpeptidase Morganella morganii S5
13 group_2052 HKOGLL_09935 48618 49346 1 yafK Murein L,D-transpeptidase YafK Morganella morganii S5
14 group_1097 HKOGLL_10605 17898 18980 1 erfK Lipoprotein-anchoring transpeptidase ErfK/SrfK Morganella morganii S5
15 group_1302 F4V73_RS01420 311910 313664 1 ldtD L,D-transpeptidase Morganella psychrotolerans
16 group_1097 F4V73_RS03525 753880 754965 1 L,D-transpeptidase family protein Morganella psychrotolerans
17 group_2052 F4V73_RS12320 48327 49034 1 murein L,D-transpeptidase family protein Morganella psychrotolerans
18 group_2052 PMI_RS01680 400656 401408 -1 murein L,D-transpeptidase family protein Proteus mirabilis HI4320
19 group_1302 PMI_RS03590 804395 806110 1 ldtD L,D-transpeptidase Proteus mirabilis HI4320
20 group_1097 PMI_RS06820 1489083 1490000 -1 L,D-transpeptidase family protein Proteus mirabilis HI4320