PF03734


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF03734, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 21 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF03734
Description L,D-transpeptidase catalytic domain

Occurence in the database

PF03734 is associated with 21 different proteins (see tab "Protein list" and "Profile")
The 21 proteins are classified into 3 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1029 FBDBKF_05800 162514 163596 -1 erfK Lipoprotein-anchoring transpeptidase ErfK/SrfK Morganella morganii S1
1 group_1244 FBDBKF_07235 123932 125665 1 ldtD L,D-transpeptidase Morganella morganii S1
2 group_2013 FBDBKF_15125 35560 36288 -1 yafK Murein L,D-transpeptidase YafK Morganella morganii S1
3 group_1244 EHELCC_03735 60521 62254 -1 ldtD L,D-transpeptidase Morganella morganii S2
4 group_2013 EHELCC_11120 48618 49346 1 yafK Murein L,D-transpeptidase YafK Morganella morganii S2
5 group_1029 EHELCC_11790 17898 18980 1 erfK Lipoprotein-anchoring transpeptidase ErfK/SrfK Morganella morganii S2
6 group_1244 NLDBIP_03735 60317 62050 -1 ldtD L,D-transpeptidase Morganella morganii S4
7 group_2013 NLDBIP_11465 48618 49346 1 yafK Murein L,D-transpeptidase YafK Morganella morganii S4
8 group_1029 NLDBIP_12130 17853 18935 1 erfK Lipoprotein-anchoring transpeptidase ErfK/SrfK Morganella morganii S4
9 group_1244 LHKJJB_09565 60431 62164 -1 ldtD L,D-transpeptidase Morganella morganii S3
10 group_2013 LHKJJB_11325 48618 49346 1 yafK Murein L,D-transpeptidase YafK Morganella morganii S3
11 group_1029 LHKJJB_11990 17898 18980 1 erfK Lipoprotein-anchoring transpeptidase ErfK/SrfK Morganella morganii S3
12 group_1244 HKOGLL_09410 128888 130621 1 ldtD L,D-transpeptidase Morganella morganii S5
13 group_2013 HKOGLL_09935 48618 49346 1 yafK Murein L,D-transpeptidase YafK Morganella morganii S5
14 group_1029 HKOGLL_10605 17898 18980 1 erfK Lipoprotein-anchoring transpeptidase ErfK/SrfK Morganella morganii S5
15 group_1244 F4V73_RS01420 311910 313664 1 ldtD L,D-transpeptidase Morganella psychrotolerans
16 group_1029 F4V73_RS03525 753880 754965 1 L,D-transpeptidase family protein Morganella psychrotolerans
17 group_2013 F4V73_RS12320 48327 49034 1 murein L,D-transpeptidase family protein Morganella psychrotolerans
18 group_2013 PMI_RS01680 400656 401408 -1 murein L,D-transpeptidase family protein Proteus mirabilis HI4320
19 group_1244 PMI_RS03590 804395 806110 1 ldtD L,D-transpeptidase Proteus mirabilis HI4320
20 group_1029 PMI_RS06820 1489083 1490000 -1 L,D-transpeptidase family protein Proteus mirabilis HI4320