Homologs in group_2013

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_15125 FBDBKF_15125 100.0 Morganella morganii S1 yafK Murein L,D-transpeptidase YafK
EHELCC_11120 EHELCC_11120 100.0 Morganella morganii S2 yafK Murein L,D-transpeptidase YafK
NLDBIP_11465 NLDBIP_11465 100.0 Morganella morganii S4 yafK Murein L,D-transpeptidase YafK
HKOGLL_09935 HKOGLL_09935 100.0 Morganella morganii S5 yafK Murein L,D-transpeptidase YafK
F4V73_RS12320 F4V73_RS12320 79.1 Morganella psychrotolerans - murein L,D-transpeptidase family protein
PMI_RS01680 PMI_RS01680 50.6 Proteus mirabilis HI4320 - murein L,D-transpeptidase family protein

Distribution of the homologs in the orthogroup group_2013

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2013

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AA99 7.57e-78 238 50 3 222 1 yafK Putative L,D-transpeptidase YafK Escherichia coli (strain K12)
P0AAA0 7.57e-78 238 50 3 222 3 yafK Putative L,D-transpeptidase YafK Escherichia coli O157:H7

  • Number of RefSeq hits:

General

Source Morganella morganii S3
Locus tag LHKJJB_11325
Feature type CDS
Gene yafK
Product Murein L,D-transpeptidase YafK
Location 48618 - 49346 (strand: 1)
Length 729 (nucleotides) / 242 (amino acids)

Contig

Accession ZDB_368
Length 188522 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2013
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF03734 L,D-transpeptidase catalytic domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3034 Cell wall/membrane/envelope biogenesis (M) M Murein L,D-transpeptidase YafK

Protein Sequence

MMIGLLFFAGQSSANTEKSASLWLTAPVSDVRNSQVFIQIFKEEKELELYKRENNGRFKLVKRYPVCQFSGGLGPKQLTGDLKSPEGFYRISLSQLNPNSRFYRAINLGFPNEFDRAHGYTGDYLMVHGDCKSVGCYAMTDAYIDEIYRYVESALLSGQTDLNIAIYPFRMTPENLNRHRNSAHLAFWQQLQPAYQYFAENQIPAVVAVVNGRYVTAAHSALPAPAADTGLLTQNTDSSRSP

Flanking regions ( +/- flanking 50bp)

TCACCAACTTATTGCCACCCTGAATATTAAGAATGCGACATATCATTTTTATGATGATCGGCCTGCTGTTTTTTGCGGGACAATCGTCAGCAAACACGGAAAAATCCGCGTCATTATGGCTCACAGCGCCGGTGAGTGATGTCCGGAACAGCCAGGTATTTATACAGATATTTAAAGAAGAAAAAGAGCTGGAGCTTTATAAGCGGGAAAATAACGGACGTTTTAAACTGGTAAAACGCTACCCGGTTTGTCAGTTTTCCGGCGGACTGGGACCCAAGCAACTGACCGGCGATTTAAAAAGCCCGGAGGGATTTTACCGTATCAGTCTGTCACAGCTTAACCCGAACAGTCGGTTTTACCGAGCGATTAACCTTGGTTTTCCCAATGAATTCGACCGTGCGCACGGCTATACCGGGGATTATCTGATGGTTCACGGAGACTGCAAATCCGTCGGCTGCTACGCCATGACAGATGCTTATATTGATGAGATTTACCGCTATGTGGAAAGCGCCCTGCTGAGCGGACAGACAGATCTGAATATCGCGATTTACCCTTTCCGGATGACGCCTGAGAACCTGAACCGCCACCGGAACTCCGCACATCTGGCGTTCTGGCAGCAGTTGCAGCCTGCTTATCAGTATTTCGCTGAAAATCAGATACCGGCAGTCGTTGCGGTTGTTAACGGCCGTTATGTAACCGCTGCACATTCAGCTTTACCGGCACCGGCAGCGGATACCGGTTTGCTGACTCAGAACACGGACTCATCCCGTTCGCCGTAATAAAAGAGAACGGCTTCGCCGGGCCCGATTTTCTGCCACTGTTCATTGCC