Homologs in group_1302

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_07235 FBDBKF_07235 100.0 Morganella morganii S1 ldtD L,D-transpeptidase
EHELCC_03735 EHELCC_03735 100.0 Morganella morganii S2 ldtD L,D-transpeptidase
NLDBIP_03735 NLDBIP_03735 100.0 Morganella morganii S4 ldtD L,D-transpeptidase
HKOGLL_09410 HKOGLL_09410 100.0 Morganella morganii S5 ldtD L,D-transpeptidase
F4V73_RS01420 F4V73_RS01420 85.0 Morganella psychrotolerans ldtD L,D-transpeptidase
PMI_RS03590 PMI_RS03590 51.9 Proteus mirabilis HI4320 ldtD L,D-transpeptidase

Distribution of the homologs in the orthogroup group_1302

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1302

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P22525 8.95e-177 516 46 4 556 1 ycbB Probable L,D-transpeptidase YcbB Escherichia coli (strain K12)
P44285 6.72e-73 244 52 5 240 3 HI_1667 Putative L,D-transpeptidase HI_1667 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P44285 1.84e-07 57 28 1 132 3 HI_1667 Putative L,D-transpeptidase HI_1667 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

  • Number of RefSeq hits:

General

Source Morganella morganii S3
Locus tag LHKJJB_09565
Feature type CDS
Gene ldtD
Product L,D-transpeptidase
Location 60431 - 62164 (strand: -1)
Length 1734 (nucleotides) / 577 (amino acids)
In genomic island -

Contig

Accession ZDB_366
Length 191897 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1302
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01471 Putative peptidoglycan binding domain
PF03734 L,D-transpeptidase catalytic domain
PF20142 Scaffold domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2989 Cell wall/membrane/envelope biogenesis (M) M Murein L,D-transpeptidase YcbB/YkuD

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K21470 L,D-transpeptidase YcbB - -

Protein Sequence

MVTGVKKVVPISAMIGTLLLTPVSWASTAPVTHLTEADAKVENLKAFSESPESTKAQAAEPVAGVNALPLSDVADSIRREVPAATPLLYTDTLTNIYAEHQLKPLWTDEKARLSLENQLAEAALAGFQPQFTAWLNALAQPDLSPLARDMILTDAALGYLYYLDNVSTKGDKWLYGARPFTFAAVSAPSLARLNTAAHNGTLAAFTDTLLPANKMYQPMRKAMLTELADTAPWPEMVINRTLRPGESHESVGALREILHRFNLISANDMMSAGAVYDKTLVAAVKQFQLQHGLEADGVIGKQTREWLNKTPQMRAAIMAVNIQRLRITPDNEPTAILVNIPDFSLYFYVDNNLILESRTIVGRAERKTPIMSSALNNVVINPPWTVPPTMSRQDVVPRGRADPGYFSSRGYTIYNGWSNNASVVDPYSIDWSVITPSNFPYRITQAPGPSNSLGRYKFNMPNSEAIYLHDTPNHSLFNKNMRAISSGCVRVNKAKDLAAILLGDAGWNETRVDGALKAGSTRYVSIPNRIPVYLYYQTAWVNAENIPQYRADIYRYDDSSLKGIDKLTDITPFLIKS

Flanking regions ( +/- flanking 50bp)

TATTAACAATTGGCCGGAACAGACATAATAAAAAATAAGAGAGGGATGTTATGGTGACGGGAGTTAAAAAAGTTGTTCCCATTTCCGCCATGATAGGAACACTGTTACTGACGCCTGTTTCGTGGGCCTCAACAGCACCGGTAACGCATCTGACTGAAGCAGATGCCAAAGTGGAAAATCTGAAAGCATTTTCAGAATCACCGGAAAGTACAAAAGCACAGGCCGCAGAGCCGGTGGCCGGTGTTAATGCACTGCCTCTGAGCGATGTCGCTGACAGTATCCGCCGTGAAGTTCCGGCGGCAACACCGTTACTTTATACCGACACACTGACAAACATTTATGCGGAACATCAGCTGAAACCGCTGTGGACCGATGAAAAAGCGCGTCTGTCCCTGGAAAATCAGCTGGCGGAAGCCGCACTTGCCGGATTCCAGCCGCAGTTCACGGCCTGGCTGAATGCCCTGGCACAGCCGGATCTGTCTCCGCTGGCGCGGGATATGATTTTAACGGATGCGGCTCTGGGTTATCTCTATTACCTCGACAACGTGAGCACCAAAGGCGATAAATGGCTGTATGGTGCGCGTCCGTTCACGTTTGCGGCTGTCAGTGCCCCGTCACTGGCGCGGCTGAATACAGCGGCTCATAACGGCACTCTGGCGGCATTTACCGATACGCTGTTACCGGCGAATAAGATGTATCAGCCGATGCGCAAAGCCATGCTGACAGAACTGGCGGATACCGCGCCGTGGCCGGAAATGGTGATTAACCGGACATTGCGTCCGGGGGAAAGCCATGAATCTGTCGGGGCACTGCGTGAGATCCTGCACCGCTTTAATCTGATCTCTGCCAATGACATGATGAGTGCCGGTGCCGTTTACGATAAAACGCTGGTGGCGGCCGTTAAACAGTTTCAGTTACAACACGGTCTGGAAGCTGATGGTGTTATCGGTAAACAGACCCGTGAGTGGCTGAATAAGACACCACAGATGCGTGCTGCCATTATGGCGGTGAATATTCAGCGTCTGCGCATTACGCCGGACAATGAACCGACCGCTATTCTGGTCAATATTCCGGATTTTTCCCTGTATTTCTATGTGGATAATAATCTGATCCTGGAATCCAGAACCATTGTCGGCCGTGCGGAGCGCAAAACGCCGATTATGTCCAGCGCCCTGAATAATGTGGTGATTAACCCGCCGTGGACGGTTCCGCCGACCATGAGCCGCCAGGATGTTGTGCCGCGCGGCAGGGCTGATCCGGGCTACTTCAGCAGCCGTGGTTACACTATCTATAACGGCTGGAGTAACAACGCCTCTGTGGTTGATCCGTACAGCATTGACTGGAGTGTTATCACGCCGTCAAACTTCCCGTACCGGATAACCCAGGCACCGGGCCCGTCCAACTCGCTGGGACGCTATAAATTCAATATGCCGAACTCAGAGGCGATTTATCTGCACGATACCCCAAACCACAGCCTGTTTAATAAAAACATGCGGGCCATCAGTTCCGGCTGTGTGCGGGTGAATAAAGCCAAAGATCTCGCGGCGATACTCCTTGGTGACGCGGGCTGGAACGAAACCCGTGTGGATGGTGCACTGAAAGCGGGCAGTACCCGTTATGTCTCTATCCCGAACCGTATTCCGGTTTATCTCTATTATCAGACTGCCTGGGTAAACGCGGAGAATATCCCGCAATATCGCGCGGATATTTACCGCTACGATGACAGCAGCCTGAAAGGTATTGATAAATTAACTGATATCACGCCTTTCCTGATAAAAAGCTGATCACATGAAGCCGTTTATTTATTACAAATAAGCGGCTTTTTTCTTCTGAA