Homologs in group_1029

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_05800 FBDBKF_05800 65.6 Morganella morganii S1 erfK Lipoprotein-anchoring transpeptidase ErfK/SrfK
EHELCC_11790 EHELCC_11790 65.6 Morganella morganii S2 erfK Lipoprotein-anchoring transpeptidase ErfK/SrfK
NLDBIP_12130 NLDBIP_12130 65.6 Morganella morganii S4 erfK Lipoprotein-anchoring transpeptidase ErfK/SrfK
LHKJJB_11990 LHKJJB_11990 65.6 Morganella morganii S3 erfK Lipoprotein-anchoring transpeptidase ErfK/SrfK
HKOGLL_10605 HKOGLL_10605 65.6 Morganella morganii S5 erfK Lipoprotein-anchoring transpeptidase ErfK/SrfK
F4V73_RS03525 F4V73_RS03525 65.6 Morganella psychrotolerans - L,D-transpeptidase family protein

Distribution of the homologs in the orthogroup group_1029

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1029

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P75954 3.7e-111 327 53 1 304 1 ycfS Probable L,D-transpeptidase YcfS Escherichia coli (strain K12)
P39176 1.81e-108 320 52 4 306 1 erfK Probable L,D-transpeptidase ErfK/SrfK Escherichia coli (strain K12)
P40680 3.9e-104 309 53 4 294 3 erfK Probable L,D-transpeptidase ErfK/SrfK Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P76193 1.62e-98 296 49 2 304 1 ynhG Probable L,D-transpeptidase YnhG Escherichia coli (strain K12)
P0AAX8 5.43e-98 293 52 6 304 1 ybiS Probable L,D-transpeptidase YbiS Escherichia coli (strain K12)
P0AAX9 5.43e-98 293 52 6 304 3 ybiS Probable L,D-transpeptidase YbiS Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AAY0 5.43e-98 293 52 6 304 3 ybiS Probable L,D-transpeptidase YbiS Escherichia coli O157:H7
Q5WC42 3.94e-16 77 31 6 186 3 ABC3535 Putative L,D-transpeptidase YkuD Shouchella clausii (strain KSM-K16)
Q65K99 1.72e-15 75 32 6 188 3 BLi01617 Putative L,D-transpeptidase YkuD Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / CCUG 7422 / NBRC 12200 / NCIMB 9375 / NCTC 10341 / NRRL NRS-1264 / Gibson 46)
P05448 4.23e-14 72 34 2 136 3 None Putative L,D-transpeptidase in ATP synthase subunits region ORF 5 Fuscovulum blasticum
O34816 1.51e-11 65 30 8 186 1 ykuD Putative L,D-transpeptidase YkuD Bacillus subtilis (strain 168)
P54539 2.62e-09 58 31 5 145 3 yqjB Putative L,D-transpeptidase YqjB Bacillus subtilis (strain 168)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS06820
Feature type CDS
Gene -
Product L,D-transpeptidase family protein
Location 1489083 - 1490000 (strand: -1)
Length 918 (nucleotides) / 305 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1029
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF03734 L,D-transpeptidase catalytic domain
PF17969 L,D-transpeptidase C-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1376 Cell wall/membrane/envelope biogenesis (M) M Lipoprotein-anchoring transpeptidase ErfK/SrfK

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K19236 L,D-transpeptidase YcfS Cationic antimicrobial peptide (CAMP) resistance -

Protein Sequence

MKKWLTLLGASLLGMSSHLTYAHEYLLPTDGSRIIGENVSYTVPDDKRSLETIAAQYQVGLLNMMEANPGIDPLLPEAGKTLQIPLQMILPDTVRKGIVINLAELRLYYYPKEGGTVDVYPIGIGQLGRETPEMVTSVSQLIKDPTWTPTANIRKNYAAKGITLPAVVPAGPDNPMGAYALRLAHSRGEYLIHGTNADFGIGLRVSSGCIRLRPDDIETLFNVVPKGSRVQVINKPIKFTETADGKQFIEVHQPLSQNEDDDPQTMPLTFTKQFTAWYESGKVDKAKVDAETIRRSGIPVDVTAY

Flanking regions ( +/- flanking 50bp)

TTATCATGATAATAGTCAGTTTATTTTATTGCTAACACACGGGATCAACAATGAAGAAATGGTTAACCTTATTGGGTGCATCGCTGTTAGGGATGAGCAGTCACTTAACTTATGCACATGAATACCTGCTACCTACGGATGGTTCACGTATCATTGGGGAAAATGTTTCTTACACCGTTCCTGATGATAAACGTTCTTTAGAAACGATCGCTGCACAATATCAAGTGGGTTTGCTAAATATGATGGAAGCCAACCCAGGTATTGATCCTCTATTACCCGAAGCGGGCAAAACACTACAAATTCCCTTACAGATGATCTTACCTGATACCGTGCGTAAAGGTATTGTCATTAATCTGGCAGAATTGCGCCTCTATTACTATCCCAAAGAAGGGGGAACCGTTGATGTCTATCCTATCGGTATTGGCCAATTAGGGCGGGAAACGCCTGAAATGGTGACATCTGTTTCTCAATTGATTAAAGATCCGACTTGGACGCCGACAGCCAATATTCGTAAAAATTATGCGGCTAAGGGGATCACGTTACCGGCAGTGGTACCAGCAGGGCCAGATAATCCAATGGGTGCATATGCGTTAAGATTAGCACACAGTCGTGGTGAGTATCTTATTCATGGTACTAATGCCGATTTTGGTATTGGCTTAAGAGTGAGTTCTGGCTGTATTAGATTACGTCCTGATGATATTGAAACACTGTTTAATGTGGTACCCAAAGGCAGTCGGGTTCAAGTGATCAATAAACCAATTAAATTTACTGAGACTGCAGATGGTAAGCAATTTATTGAAGTGCACCAACCACTCTCACAAAATGAAGATGACGATCCCCAGACGATGCCCCTAACGTTTACTAAACAATTTACGGCTTGGTATGAAAGTGGCAAAGTGGATAAAGCAAAAGTGGATGCAGAAACTATTCGTCGTTCAGGTATACCGGTCGATGTAACCGCATATTGATGATAGATATTCAATGATGAAAAAAAGCAGATACTTCATAGGTATCTGCT