PF03709


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF03709, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 14 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF03709
Description Orn/Lys/Arg decarboxylase, N-terminal domain

Occurence in the database

PF03709 is associated with 14 different proteins (see tab "Protein list" and "Profile")
The 14 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_75 FBDBKF_10865 708 2870 1 speF ornithine decarboxylase SpeF Morganella morganii S1
1 group_3118 FBDBKF_19775 18527 18838 -1 Amino acid decarboxylase Morganella morganii S1
2 group_75 EHELCC_05360 56598 58760 -1 speF ornithine decarboxylase SpeF Morganella morganii S2
3 group_3118 EHELCC_10870 212296 212607 -1 Amino acid decarboxylase Morganella morganii S2
4 group_75 NLDBIP_05680 97663 99825 -1 speF ornithine decarboxylase SpeF Morganella morganii S4
5 group_3118 NLDBIP_11215 190567 190878 -1 Amino acid decarboxylase Morganella morganii S4
6 group_75 LHKJJB_02560 75187 77349 -1 speF ornithine decarboxylase SpeF Morganella morganii S3
7 group_3118 LHKJJB_10140 650 961 1 Amino acid decarboxylase Morganella morganii S3
8 group_75 HKOGLL_15940 98627 100789 -1 speF ornithine decarboxylase SpeF Morganella morganii S5
9 group_3118 HKOGLL_16305 659 970 1 Amino acid decarboxylase Morganella morganii S5
10 group_75 F4V73_RS01740 385315 387516 1 speC ornithine decarboxylase Morganella psychrotolerans
11 group_75 F4V73_RS11525 452235 454397 1 speF ornithine decarboxylase SpeF Morganella psychrotolerans
12 group_75 PMI_RS01480 362663 364825 -1 speF ornithine decarboxylase SpeF Proteus mirabilis HI4320
13 group_3118 PMI_RS12935 2870969 2871280 1 Orn/Lys/Arg decarboxylase N-terminal domain-containing protein Proteus mirabilis HI4320