Homologs in group_3118

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5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_19775 FBDBKF_19775 100.0 Morganella morganii S1 - Amino acid decarboxylase
EHELCC_10870 EHELCC_10870 100.0 Morganella morganii S2 - Amino acid decarboxylase
LHKJJB_10140 LHKJJB_10140 100.0 Morganella morganii S3 - Amino acid decarboxylase
HKOGLL_16305 HKOGLL_16305 100.0 Morganella morganii S5 - Amino acid decarboxylase
PMI_RS12935 PMI_RS12935 100.0 Proteus mirabilis HI4320 - Orn/Lys/Arg decarboxylase N-terminal domain-containing protein

Distribution of the homologs in the orthogroup group_3118

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3118

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P24169 4.7e-08 52 31 0 83 1 speF Inducible ornithine decarboxylase Escherichia coli (strain K12)
P21169 9.86e-07 48 26 1 103 1 speC Constitutive ornithine decarboxylase Escherichia coli (strain K12)
P44317 6.04e-06 46 31 1 85 3 speF Ornithine decarboxylase Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

  • Number of RefSeq hits:

General

Source Morganella morganii S4
Locus tag NLDBIP_11215
Feature type CDS
Gene -
Product Amino acid decarboxylase
Location 190567 - 190878 (strand: -1)
Length 312 (nucleotides) / 103 (amino acids)

Contig

Accession ZDB_525
Length 191527 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3118
Orthogroup size 6
N. genomes 6

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Genomic region

Domains

PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain

Protein Sequence

MKNYKVAVSYDMSDSISTHRKYVNILHTDFSYIAAIIISLDNIQDGRLDFIEQNSFGQPVFAIINKDKVIPTNIINRLTGVIDLNKKNTDRIQPAVPRLTDNI

Flanking regions ( +/- flanking 50bp)

TATTTTCACTTAATATTTCAGCAAGATTTTTTACCAAAAAGGAATTAAAAATGAAAAATTATAAAGTCGCAGTCAGCTATGATATGTCTGACTCTATTTCAACTCATCGTAAATATGTTAATATTCTACATACTGACTTCTCTTATATTGCCGCAATTATTATTTCACTTGATAATATTCAAGATGGAAGGCTCGATTTTATTGAACAAAATAGCTTTGGACAGCCTGTATTCGCTATTATTAATAAAGATAAAGTTATTCCGACTAATATTATTAATCGATTAACAGGTGTAATTGATTTAAATAAAAAGAATACAGACCGGATTCAGCCGGCTGTTCCCAGACTGACCGATAATATCTGACCATAAAGCCGTTTCTAGGCTGCATCCACTTCCCGCTGAAACGCCAGCTC