PF03544


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF03544, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 28 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF03544
Description Gram-negative bacterial TonB protein C-terminal

Occurence in the database

PF03544 is associated with 28 different proteins (see tab "Protein list" and "Profile")
The 28 proteins are classified into 4 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_3176 FBDBKF_01210 225158 225871 -1 tonB Periplasmic protein TonB, links inner and outer membranes Morganella morganii S1
1 group_268 FBDBKF_05245 55532 56272 -1 tonB Protein TonB Morganella morganii S1
2 group_2140 FBDBKF_16085 3940 4737 -1 tonB Periplasmic protein TonB, links inner and outer membranes Morganella morganii S1
3 group_410 FBDBKF_17715 219 995 -1 tonB Periplasmic protein TonB, links inner and outer membranes Morganella morganii S1
4 group_3176 EHELCC_00335 82997 83710 1 tonB Periplasmic protein TonB, links inner and outer membranes Morganella morganii S2
5 group_410 EHELCC_09740 179651 180427 -1 tonB Periplasmic protein TonB, links inner and outer membranes Morganella morganii S2
6 group_268 EHELCC_12345 125222 125962 1 tonB Protein TonB Morganella morganii S2
7 group_2140 EHELCC_16120 3940 4737 -1 tonB Periplasmic protein TonB, links inner and outer membranes Morganella morganii S2
8 group_3176 NLDBIP_03125 596426 597139 -1 tonB Periplasmic protein TonB, links inner and outer membranes Morganella morganii S4
9 group_410 NLDBIP_10120 179651 180427 -1 tonB Periplasmic protein TonB, links inner and outer membranes Morganella morganii S4
10 group_268 NLDBIP_12685 125177 125917 1 tonB Protein TonB Morganella morganii S4
11 group_2140 NLDBIP_17220 57433 58230 1 tonB Periplasmic protein TonB, links inner and outer membranes Morganella morganii S4
12 group_3176 LHKJJB_04640 203667 204380 -1 tonB Periplasmic protein TonB, links inner and outer membranes Morganella morganii S3
13 group_410 LHKJJB_07635 36811 37587 1 tonB Periplasmic protein TonB, links inner and outer membranes Morganella morganii S3
14 group_268 LHKJJB_12545 125222 125962 1 tonB Protein TonB Morganella morganii S3
15 group_2140 LHKJJB_17140 60535 61332 1 tonB Periplasmic protein TonB, links inner and outer membranes Morganella morganii S3
16 group_3176 HKOGLL_02405 83202 83915 1 tonB Periplasmic protein TonB, links inner and outer membranes Morganella morganii S5
17 group_410 HKOGLL_07185 36811 37587 1 tonB Periplasmic protein TonB, links inner and outer membranes Morganella morganii S5
18 group_268 HKOGLL_11160 125222 125962 1 tonB Protein TonB Morganella morganii S5
19 group_2140 HKOGLL_16700 3940 4737 -1 tonB Periplasmic protein TonB, links inner and outer membranes Morganella morganii S5
20 group_268 F4V73_RS05700 1212089 1212811 -1 TonB family protein Morganella psychrotolerans
21 group_410 F4V73_RS15245 34446 35168 1 TonB family protein Morganella psychrotolerans
22 group_2140 F4V73_RS17530 141708 142511 1 energy transducer TonB Morganella psychrotolerans
23 group_268 PMI_RS06540 1434713 1435438 -1 tonB TonB system transport protein TonB Proteus mirabilis HI4320
24 group_410 PMI_RS07545 1647458 1648312 -1 TonB family protein Proteus mirabilis HI4320
25 group_268 PMI_RS11845 2617514 2617921 -1 TonB family protein Proteus mirabilis HI4320
26 group_2140 PMI_RS15450 3434657 3435460 1 energy transducer TonB Proteus mirabilis HI4320
27 group_410 PMI_RS18455 4052295 4053086 1 energy transducer TonB Proteus mirabilis HI4320