PF03544
Help to interpret the results
Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF03544, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains
within the database. 28 occurences are identified.
The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.
Description
External link |
PF03544 |
Description |
Gram-negative bacterial TonB protein C-terminal |
Occurence in the database
PF03544 is associated with 28 different proteins (see tab "Protein list" and "Profile") |
The 28 proteins are classified into 4 different orthogroup(s)
|
# |
Orthogroup |
Locus |
Start |
Stop |
S. |
Gene |
Product |
Organism |
0 |
group_3176 |
FBDBKF_01210 |
225158 |
225871 |
-1 |
tonB |
Periplasmic protein TonB, links inner and outer membranes |
Morganella morganii S1 |
1 |
group_268 |
FBDBKF_05245 |
55532 |
56272 |
-1 |
tonB |
Protein TonB |
Morganella morganii S1 |
2 |
group_2140 |
FBDBKF_16085 |
3940 |
4737 |
-1 |
tonB |
Periplasmic protein TonB, links inner and outer membranes |
Morganella morganii S1 |
3 |
group_410 |
FBDBKF_17715 |
219 |
995 |
-1 |
tonB |
Periplasmic protein TonB, links inner and outer membranes |
Morganella morganii S1 |
4 |
group_3176 |
EHELCC_00335 |
82997 |
83710 |
1 |
tonB |
Periplasmic protein TonB, links inner and outer membranes |
Morganella morganii S2 |
5 |
group_410 |
EHELCC_09740 |
179651 |
180427 |
-1 |
tonB |
Periplasmic protein TonB, links inner and outer membranes |
Morganella morganii S2 |
6 |
group_268 |
EHELCC_12345 |
125222 |
125962 |
1 |
tonB |
Protein TonB |
Morganella morganii S2 |
7 |
group_2140 |
EHELCC_16120 |
3940 |
4737 |
-1 |
tonB |
Periplasmic protein TonB, links inner and outer membranes |
Morganella morganii S2 |
8 |
group_3176 |
NLDBIP_03125 |
596426 |
597139 |
-1 |
tonB |
Periplasmic protein TonB, links inner and outer membranes |
Morganella morganii S4 |
9 |
group_410 |
NLDBIP_10120 |
179651 |
180427 |
-1 |
tonB |
Periplasmic protein TonB, links inner and outer membranes |
Morganella morganii S4 |
10 |
group_268 |
NLDBIP_12685 |
125177 |
125917 |
1 |
tonB |
Protein TonB |
Morganella morganii S4 |
11 |
group_2140 |
NLDBIP_17220 |
57433 |
58230 |
1 |
tonB |
Periplasmic protein TonB, links inner and outer membranes |
Morganella morganii S4 |
12 |
group_3176 |
LHKJJB_04640 |
203667 |
204380 |
-1 |
tonB |
Periplasmic protein TonB, links inner and outer membranes |
Morganella morganii S3 |
13 |
group_410 |
LHKJJB_07635 |
36811 |
37587 |
1 |
tonB |
Periplasmic protein TonB, links inner and outer membranes |
Morganella morganii S3 |
14 |
group_268 |
LHKJJB_12545 |
125222 |
125962 |
1 |
tonB |
Protein TonB |
Morganella morganii S3 |
15 |
group_2140 |
LHKJJB_17140 |
60535 |
61332 |
1 |
tonB |
Periplasmic protein TonB, links inner and outer membranes |
Morganella morganii S3 |
16 |
group_3176 |
HKOGLL_02405 |
83202 |
83915 |
1 |
tonB |
Periplasmic protein TonB, links inner and outer membranes |
Morganella morganii S5 |
17 |
group_410 |
HKOGLL_07185 |
36811 |
37587 |
1 |
tonB |
Periplasmic protein TonB, links inner and outer membranes |
Morganella morganii S5 |
18 |
group_268 |
HKOGLL_11160 |
125222 |
125962 |
1 |
tonB |
Protein TonB |
Morganella morganii S5 |
19 |
group_2140 |
HKOGLL_16700 |
3940 |
4737 |
-1 |
tonB |
Periplasmic protein TonB, links inner and outer membranes |
Morganella morganii S5 |
20 |
group_268 |
F4V73_RS05700 |
1212089 |
1212811 |
-1 |
|
TonB family protein |
Morganella psychrotolerans |
21 |
group_410 |
F4V73_RS15245 |
34446 |
35168 |
1 |
|
TonB family protein |
Morganella psychrotolerans |
22 |
group_2140 |
F4V73_RS17530 |
141708 |
142511 |
1 |
|
energy transducer TonB |
Morganella psychrotolerans |
23 |
group_268 |
PMI_RS06540 |
1434713 |
1435438 |
-1 |
tonB |
TonB system transport protein TonB |
Proteus mirabilis HI4320 |
24 |
group_410 |
PMI_RS07545 |
1647458 |
1648312 |
-1 |
|
TonB family protein |
Proteus mirabilis HI4320 |
25 |
group_268 |
PMI_RS11845 |
2617514 |
2617921 |
-1 |
|
TonB family protein |
Proteus mirabilis HI4320 |
26 |
group_2140 |
PMI_RS15450 |
3434657 |
3435460 |
1 |
|
energy transducer TonB |
Proteus mirabilis HI4320 |
27 |
group_410 |
PMI_RS18455 |
4052295 |
4053086 |
1 |
|
energy transducer TonB |
Proteus mirabilis HI4320 |