PF03009
Help to interpret the results
Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF03009, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains
within the database. 21 occurences are identified.
The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.
Description
External link |
PF03009 |
Description |
Glycerophosphoryl diester phosphodiesterase family |
Occurence in the database
PF03009 is associated with 21 different proteins (see tab "Protein list" and "Profile") |
The 21 proteins are classified into 3 different orthogroup(s)
|
# |
Orthogroup |
Locus |
Start |
Stop |
S. |
Gene |
Product |
Organism |
0 |
group_1474 |
FBDBKF_09500 |
142432 |
143169 |
-1 |
narL |
two-component system response regulator NarL |
Morganella morganii S1 |
1 |
group_1765 |
FBDBKF_12285 |
118354 |
119436 |
1 |
glpQ |
glycerophosphodiester phosphodiesterase |
Morganella morganii S1 |
2 |
group_2022 |
FBDBKF_15175 |
45090 |
45941 |
-1 |
ugpQ |
Glycerophosphoryl diester phosphodiesterase |
Morganella morganii S1 |
3 |
group_1474 |
EHELCC_09910 |
2935 |
3672 |
1 |
narL |
two-component system response regulator NarL |
Morganella morganii S2 |
4 |
group_2022 |
EHELCC_11070 |
38965 |
39816 |
1 |
ugpQ |
Glycerophosphoryl diester phosphodiesterase |
Morganella morganii S2 |
5 |
group_1765 |
EHELCC_14020 |
15269 |
16351 |
-1 |
glpQ |
glycerophosphodiester phosphodiesterase |
Morganella morganii S2 |
6 |
group_2022 |
NLDBIP_11415 |
38965 |
39816 |
1 |
ugpQ |
Glycerophosphoryl diester phosphodiesterase |
Morganella morganii S4 |
7 |
group_1765 |
NLDBIP_15115 |
19206 |
20288 |
-1 |
glpQ |
glycerophosphodiester phosphodiesterase |
Morganella morganii S4 |
8 |
group_1474 |
NLDBIP_19230 |
2933 |
3670 |
1 |
narL |
two-component system response regulator NarL |
Morganella morganii S4 |
9 |
group_2022 |
LHKJJB_11275 |
38965 |
39816 |
1 |
ugpQ |
Glycerophosphoryl diester phosphodiesterase |
Morganella morganii S3 |
10 |
group_1765 |
LHKJJB_15495 |
118354 |
119436 |
1 |
glpQ |
glycerophosphodiester phosphodiesterase |
Morganella morganii S3 |
11 |
group_1474 |
LHKJJB_19140 |
18399 |
19136 |
-1 |
narL |
two-component system response regulator NarL |
Morganella morganii S3 |
12 |
group_2022 |
HKOGLL_09885 |
38965 |
39816 |
1 |
ugpQ |
Glycerophosphoryl diester phosphodiesterase |
Morganella morganii S5 |
13 |
group_1765 |
HKOGLL_14615 |
105017 |
106099 |
1 |
glpQ |
glycerophosphodiester phosphodiesterase |
Morganella morganii S5 |
14 |
group_1474 |
HKOGLL_18920 |
18399 |
19136 |
-1 |
narL |
two-component system response regulator NarL |
Morganella morganii S5 |
15 |
group_1474 |
F4V73_RS10470 |
211551 |
212288 |
1 |
|
glycerophosphoryl diester phosphodiesterase |
Morganella psychrotolerans |
16 |
group_2022 |
F4V73_RS12270 |
38564 |
39373 |
1 |
|
glycerophosphodiester phosphodiesterase family protein |
Morganella psychrotolerans |
17 |
group_1765 |
F4V73_RS17115 |
52693 |
53766 |
1 |
glpQ |
glycerophosphodiester phosphodiesterase |
Morganella psychrotolerans |
18 |
group_2022 |
PMI_RS01730 |
409469 |
410341 |
-1 |
|
glycerophosphodiester phosphodiesterase family protein |
Proteus mirabilis HI4320 |
19 |
group_1765 |
PMI_RS17860 |
3922509 |
3923588 |
-1 |
glpQ |
glycerophosphodiester phosphodiesterase |
Proteus mirabilis HI4320 |
20 |
group_1474 |
PMI_RS18005 |
3956051 |
3956767 |
1 |
|
glycerophosphoryl diester phosphodiesterase |
Proteus mirabilis HI4320 |