Homologs in group_2022

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_15175 FBDBKF_15175 57.8 Morganella morganii S1 ugpQ Glycerophosphoryl diester phosphodiesterase
EHELCC_11070 EHELCC_11070 57.8 Morganella morganii S2 ugpQ Glycerophosphoryl diester phosphodiesterase
NLDBIP_11415 NLDBIP_11415 57.8 Morganella morganii S4 ugpQ Glycerophosphoryl diester phosphodiesterase
LHKJJB_11275 LHKJJB_11275 57.8 Morganella morganii S3 ugpQ Glycerophosphoryl diester phosphodiesterase
HKOGLL_09885 HKOGLL_09885 57.8 Morganella morganii S5 ugpQ Glycerophosphoryl diester phosphodiesterase
F4V73_RS12270 F4V73_RS12270 56.3 Morganella psychrotolerans - glycerophosphodiester phosphodiesterase family protein

Distribution of the homologs in the orthogroup group_2022

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2022

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P9WLF0 3.34e-62 201 41 6 274 3 MT2337 Uncharacterized protein MT2337 Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P9WLF1 4.06e-62 201 41 6 274 1 Rv2277c Uncharacterized protein Rv2277c Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P37965 1.27e-16 81 35 4 141 1 glpQ Glycerophosphodiester phosphodiesterase Bacillus subtilis (strain 168)
Q8RB32 1.12e-14 75 32 2 146 1 UgpQ Glycerophosphodiester phosphodiesterase Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4)
O07592 1.24e-14 75 28 9 262 3 yhdW Putative glycerophosphodiester phosphodiesterase YhdW Bacillus subtilis (strain 168)
A0A8F4N283 1.44e-12 69 28 11 274 1 bagdpd Glycerophosphodiester phosphodiesterase Bacillus altitudinis
Q9JL56 2.8e-10 63 28 4 162 1 Gde1 Glycerophosphodiester phosphodiesterase 1 Mus musculus
Q9JL55 3.95e-10 63 28 4 162 1 Gde1 Glycerophosphodiester phosphodiesterase 1 Rattus norvegicus
Q9NZC3 2.42e-09 60 26 5 172 1 GDE1 Glycerophosphodiester phosphodiesterase 1 Homo sapiens
Q3T0T0 1.07e-08 58 34 1 94 2 GDE1 Glycerophosphodiester phosphodiesterase 1 Bos taurus
Q8N9F7 1.91e-08 58 22 4 273 1 GDPD1 Lysophospholipase D GDPD1 Homo sapiens
Q9CRY7 8.01e-08 56 22 5 272 1 Gdpd1 Lysophospholipase D GDPD1 Mus musculus
Q0VGK4 5.23e-07 53 22 8 276 2 Gdpd1 Lysophospholipase D GDPD1 Rattus norvegicus
Q99LY2 1.33e-06 52 19 8 308 1 Gdpd3 Lysophospholipase D GDPD3 Mus musculus
P54527 1.4e-06 52 29 1 113 4 yqiK Uncharacterized protein YqiK Bacillus subtilis (strain 168)
P47625 1.56e-06 51 31 2 107 4 MG385 Uncharacterized protein MG385 Mycoplasma genitalium (strain ATCC 33530 / DSM 19775 / NCTC 10195 / G37)
P10908 1.26e-05 49 33 2 100 1 ugpQ Glycerophosphodiester phosphodiesterase, cytoplasmic Escherichia coli (strain K12)
Q95JR7 4.71e-05 48 26 4 154 2 GDPD4 Glycerophosphodiester phosphodiesterase domain-containing protein 4 Macaca fascicularis
P9WMU3 5.69e-05 47 34 0 76 1 glpQ1 Probable glycerophosphodiester phosphodiesterase 1 Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WMU2 5.69e-05 47 34 0 76 3 glpQ1 Probable glycerophosphodiester phosphodiesterase 1 Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
Q6W3E5 6.1e-05 47 27 5 155 2 GDPD4 Glycerophosphodiester phosphodiesterase domain-containing protein 4 Homo sapiens
P75212 6.72e-05 47 32 2 107 4 MPN_566 Uncharacterized protein MG385 homolog Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS01730
Feature type CDS
Gene -
Product glycerophosphodiester phosphodiesterase family protein
Location 409469 - 410341 (strand: -1)
Length 873 (nucleotides) / 290 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_2022
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF03009 Glycerophosphoryl diester phosphodiesterase family

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0584 Lipid transport and metabolism (I) I Glycerophosphoryl diester phosphodiesterase

Protein Sequence

MIKIFIAISFLFYSVFVMTSPKIIAHRGGTADAPENTEIAIKTALSNQADAIWITVQLSKDNVPVLYRPSDLKSLTNGQGAISTFTAKELAQWDAGYKYGEAQQFPYRNKGVTIPTLEYILTQFPKTQFYIDLKSPDADPVIQGKALASVLSKHNALERTRVYSTNSAFLDALPDNVQRFESRDVTRDILANITMGHICLLPENLDITRWYGLELHRKVEVVEKYTLGEARSAAVLSWDKDAMSCFRAGGNAHIVLFGINTEKDYLQAVELGADAVMVDSPAKIKAFRKE

Flanking regions ( +/- flanking 50bp)

TTTATCGTAATTATTTGAAAATCAAATATAAAACAAGGAAATAGAGTTATATGATCAAAATATTTATTGCAATTTCATTCCTCTTTTACTCAGTATTTGTTATGACTTCTCCTAAAATTATTGCACACAGAGGTGGCACAGCGGATGCACCTGAAAATACCGAAATTGCTATCAAAACAGCACTAAGCAATCAAGCTGATGCAATTTGGATAACCGTTCAACTGTCTAAAGATAATGTCCCTGTTCTTTATCGTCCAAGTGATCTAAAAAGCCTCACTAATGGGCAAGGGGCAATTTCAACCTTTACTGCCAAAGAATTGGCGCAATGGGATGCAGGATATAAATATGGGGAAGCACAACAATTTCCATATCGCAATAAAGGAGTTACTATCCCGACATTGGAGTATATTCTGACTCAATTTCCTAAAACACAATTCTATATTGACTTAAAATCACCTGATGCCGATCCCGTTATACAAGGCAAAGCATTAGCTTCGGTATTAAGCAAACATAATGCGTTAGAGAGAACGCGTGTTTATTCTACCAATAGTGCTTTTTTAGATGCGTTACCTGATAACGTACAACGCTTTGAAAGTCGTGATGTTACCCGCGATATCTTAGCCAATATTACTATGGGACATATCTGTTTACTGCCAGAAAATCTTGATATCACACGTTGGTATGGCCTTGAACTGCACAGAAAAGTTGAGGTGGTTGAAAAATATACCTTAGGTGAAGCTCGTTCAGCGGCTGTATTAAGTTGGGACAAAGATGCGATGTCTTGTTTTCGTGCGGGGGGTAATGCGCATATCGTTTTATTCGGTATCAATACTGAGAAAGATTATTTGCAAGCAGTAGAATTAGGTGCTGATGCAGTTATGGTTGATTCTCCAGCTAAAATAAAAGCATTCAGAAAAGAGTAAACATCGTTGCGACATTGGCGCTTTTTTACCTTAATACATTTCTCTTCTAC